GgaINT0019524 @ galGal3
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
NA
Coordinates
chr12:2930372-2930910:+
Coord C1 exon
chr12:2930372-2930606
Coord A exon
chr12:2930607-2930791
Coord C2 exon
chr12:2930792-2930910
Length
185 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CTTTGCCTCCCTCCTCACAGGGA
3' ss Score
11.8
Exon sequences
Seq C1 exon
GTGATGAAGGAATCAGCCAGTGAGCTATCTCGCCCTCCCTCTGAAGGCTGCTACATCCATGGCTTGTTTCTTGAGGGTGCCCGCTGGGACACGTCTGCGTTTCAGCTGGCGGAGTCCCGCCCCAAGGAGCTGTACAGTGAGATGGCTGTCATCTGGCTGCTTCCCGTCGCCAATCGCAAGCCTCCAGCTGCTGGCATATACCTCTGCCCTATCTATAAGACGCTCACTCGTGCAG
Seq A exon
GTAGGTGCCTTAAAGGCAGCCCCCAGAAGCAAAGGAGACCCTAGAAGTCAGTAGGATAGGCAGCGCAGGAGAGATTGCAGGAGCTCTTACAGCTCTTACTGTGCCAGCCGTCCAGGACTGCTAGCCTGTGCCCTGGGAGCAGGGCTGCAGTGCCACGCTGCACACCTTTGCCTCCCTCCTCACAG
Seq C2 exon
GGACACTGTCAACAACGGGTCACTCCACCAACTACGTGATCGCTGTGGAGATCCCCACAGACAAGCCTGAGAAGCACTGGATCAAACGAGGCACGGCCTTGATCTGCGCCCTGGACTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:78
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(11.0=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(5.1=90.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTCTGAAGGCTGCTACA
R:
GCGATCACGTAGTTGGTGGAG
Band lengths:
244-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]