BtaINT0050194 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54103543-54109771:-
Coord C1 exon
chr17:54109626-54109771
Coord A exon
chr17:54103696-54109625
Coord C2 exon
chr17:54103543-54103695
Length
5930 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
ATTATCTCTTTCTGTTTCAGATT
3' ss Score
13.13
Exon sequences
Seq C1 exon
TTCATACAGTGGATACAACCCGTACTACCTGGACACTGGAGCAAATGGTAAAGATTAGGCAACCTGTTCTTTTGGTTGGTGAATCTGGTACCTCCAAGACAGCCACTACCCACAACTTCCTGAAAAACCTGAATGAAGAGACTAAT
Seq A exon
GTAAGTCATTATCTGTATCTATGGACAAATAGCAAATTACCCCAACACAAAGCAGTTCATACAACAAATACTATCTCACAGTTTCTGCAGATCTGGAACCTGGGGGTGGCTTAGCTGGTTGTTCTAGCCCAGGCTCTTTCATGAGATGGCAAGTTTGACTAGGGCTGAGGTCATCTGAAGGCTTGACTATGGCTGGGGGAATCCTCTTTTGAGATGTTCGGTATCAATTCCCCACCATGTGAGCCTCTCCAAGCACCCTGTTATAGTCCTTTATTTCTTCCTGAAGATTATTTATTCATTTATTTATTTTATGGCTGCACTGGTTTTTTGTTGCTGCACGCAAGCTTTCTCTACTTGTGGCAAGCAGGGGCTGCTTTCTAGTTCAGGTACATGGGCTCCCTCATTGCAGTGGCTCCTCTTGTTGTGGAACACAGGTTTTAGAATGTGCGGGCTCAGTAGTTGCAGTGCATGGGCTTAGTTGCTCCACAGCATGTGGGATCTTAGTTCCCCAACCAGGGATAGAACCTGTGTCCTTTGCATTGGCACGCAGATTTTTTTTTTCTATTTTTTTTAATTAATATTTTTTTAATTAATTTTTTTTTTTACTTTACAATATTGTATTGGTTTTGCCCTACATCTACATGCATCTGCCGCGGGTGTACACGTGTTCCCCATCCTGAACCCCGCTCCCGCCTGCCTCCCCATACCATCCCTCTGGGTCATCCCAGTGCACCATCCCCAAGCTTCCTGTATCCTGCATTGAACCTGGACTGGCGATTCATTTCTTATATGATATTATACATGTTTTAATGCCATTCTCCCAAATCATCCCCCCCTCCCTCTCCCACAGAGTCCAAAAGACTGTTCTATACATCTGTGTCTCTTTTGCTGTCTCGCATACAGGGTTGTCGTTACCATCTTTCTAAATTCCATATATATATATATATATATATATATATATATATATATAGTGTATATACATATATATACTAATGCATATATATATGCATTAGTATACTGTATTGGTGTTTTTCTTTCTGGCTTACTTCACTCTGTATAACCGGCTCCAGTTTCATCCACCTCATTAGAACTGATTCAAATTTATTCTTTTTAATGGCTGAGTAATACTCCATTGTGTATATGTAATATGGCTTTCTTATCCATTCATGTGCTGATGGACATCTAGGTTGCTTCCATGTCCTGGCTATTATAAACAGTGCTGCAATGAACATTGGGGTACATGTGTCTCTTTCAATTCTGGTTTCCTTGGTGTGTATGCCCAGCATTGGGATTGCTATGTCGTATGGCAGTTCTATTTCCAGTTTTCTAAGGAATCTCCATACTGTTCTCCATAGTGGCTGTACTAGTTTACATTCTCACCAACTGTAAGAGGGTTCCCTTTTCTCTACATCTTCTCCAGCATTTATTGCTTGTAGACTTTTGGATCGCAGCCATTCTGACTGGAGTGAAATGGTACCTCATTGTGGTTTTGATTTGCATTTCTCTGATAATGAGTGATGTTGAGCATCGTTTCATGTGTTTGTTAGCCATCTGCATGTCTTCTTTGGAGAAATGTCTATTTAGTTCTTTGGCCCATTTTTTGATTGGGTCATTTATTTTTCTGGAATTGAGCTGCAGAAGTTGCTTGTATATTTTTGAGATTAGTTGTTTGTCAGTTGCTTCATGTCCTATTATTTTCTCCCATTCTGAAGGCTGTCTTTTAACCTTGCTTATAGTTTCTTTTGTTGTGCAGAAGCTTTTAATTTTAATTAGATCCCATTTGTTTATTTTTGCTTTTATTTCCAATGTTTTGGGAGGTGGGTCATAGAGGATCCTGCTGTGATGTATGTCTGAGAGTGTTTTGCCTATGTTCTCCTCTAAGAGTTTTATAGTTTCTGGTCTTATGTTTAGATCTTTAATCCATTTTGAGTTTATTTTTGTGTATGGCATTAGAAAGTGTTCTAGTTTCATTCTTTTACAAGTGGTTGACCAGTTTTCCTAGCACCACTTGTTAAAGAGATTGTCTTTTCTCCTTGTATATTCTTGCCTCCTTTGTCAAAGATAAGGTGTCCATAGGTGCGTGGGTTTATCTCTGGGCTTTCTATTTTGTTCCGTTGATCTATATTTCTTTGTGCCAGTACCATACTGTTTTGATGACTGTGGCTTTGTAGTAGAGCCTGAAGTCAGGCAGGTTGATTCCTCCAGTTCCATTCTTCTTTCTCAAGATTGCTTTGGCTATTCGAGGTTTTTTTGTATTTCCATACAAATTGTGAAATTATTTGTTCTAGCTCTGTGAAAAATACCGTTGTTAGCTTGATAGGGATTGCATTGAATCTGTAGATTGCTTTGGGTAGTATACTCATTTTCACTATATTGATTCTTCCAATCCATGAACATGGTATATTTCTCCATCTATTAGTGTCCTCTTTGATCAGGGTTTTATAGTTTTATATATATAGGTCTTTAGTTTCTTTAGGTAGATATATTCCTAAGTATTTTATTCTTTTCATTGCAATGGTGAATGGAATTGTTTCCTTAATTTCTCTTTCTATTTTCTCATTATTAGTGTATAGGAATGCAAAGGATTTCTATGTGTTGATTTTATATCCTTGGCAGGCAGATTCTTAACCACTGCACCTGCTGTTGTTCTCTTGACCTGGCATCTGACTTCCCTCAGAGTGAATGTCCAAGGTAGAAAAGCAGACACGACAATGCTTTGTATGATTCAGGAAACCGCACACCATCACTTTTGCTGCATTTTGTGGATCACAGAGGCACTACTGTGGCCCCCTCTGATGCAACATAGGAGGGGGCTACACAGGGTGTGGGTACCTGGAGGTGAGGATGATTGGGGGTCATCTTGAAGGCTGGCAGTTACATTCCTCATCACCATTTTGTGGTTTTTCATTTCCTTCCTCCAGTCATATGCCAGATGTGGGAGGGTTTGGGTACTCCGGTGCAAACGACAATGAACAAAGCTATTAAGGTCCACCCTCATTAAGAGGGGACCCTGACATGAGAATGAATCATGCATGGAACGTGATTGTGCAGAACATGCCAGGTGCACCAAGATGTTAGGAAGGAGGGTCCCTGCGTTTCTCCTTTCTGTGCACTCTGAGTGGTCCTACATGGCCCACCTGCTCACCATTGCAGTTCTCCTGGTTTTAAACAATTTTTATTTAACTTTTTAAAATTTGCAGCATGTGGGATCTTTAGTTGTGGCATGTCAGATCTAGTTCCCTGACCAGGGATCCAACTTGGGCCCCCTGCATTGGGAGCTCAGAGTCTTAGCCAGTGGACAATCAGGGAGTGCTAGTACTAAGTCATGTCTGACTCTTTGCGACCCTATGGACTGTAGCCCACCAGGCTCCTCTGTCCATGAGATTCTCCAGGCAAGAATAGTGGAGTGGGTTGCCATTTCCTCCTCCAGAAGATCTTCCCGACCCTGGGATCAAACCCGCATCTCTTACTATTGGCAGGTGGGTTCTTTACCACTAGTGCCACCTGGGAGGCCCCATTCCCTACTTAATGTTTTATTACCAAGTAAAGACTCTTATCTCCTCCAAGAAGCTGCCTGTGATTTTCGGGATGTCCAGCTGTCACATACTTGTCCCCAGTGCACGCACTTATCCAGTTCCTTGTTAACGTTGTCCATCTTTGAGGTTCTTGATTCTGATTCTGGCCTTCTGGAACCTCCAACCAGAGAAAAGCTTCCCACTGCTCTCCTCTCTGACTCTTCCTTACACCTGTGCTACATGTGGCAGAGGGACTCCAGGGAATCCTGTGGCCTTCCGGGGTAGGGAGTGGTCAGCCTGGGTTTGTGATGGGCACATAATGGTTGAGGGCAGGATTGGGCCTTGCTGCCCCCAAATGGATGGTCAAGCTCACTCATGTACTGGCGTGCGCAAGCATGGCTATTTAGCTTTAAGAATGCCATTGTGGAGGGCACTTGAGGAGTGTTTACAGCCAGAGGGGCCTACAAGTTTATGGAGTTGGGTAAAGAAAACTTGACTTCAGTAGCCCCACCCCCGCCAGCCTCTGTGCTCCTCTCCACCGAGACTCAGCAGCTGGTGCTCATAGATCCAACAAGGCACAGTTCAGTGGTTAGAACTCCATGCTTTCACTGCGGAGGTTCAATTCTTGGTCAGGGAACTAAAATCTGGCAAGCCTCAAGGTGAGACAAAAAAAGAAAGACACATCCAAACACGTTCACAGTACAGACATGCATGTTTATTCCCCCATGTTCAGGTCAGCTGCACCTGCATTTGTGGGCACCCAGGAGAAGGGTGTTATCTAAGGCAGTGGTTCTTTTTTATTTATTTATATTTTTGGTTGCACTGGGTCTTTGTTGCTGCGTGCGTGCTTTCTCTAGTTGCGGCAAGCAGGGGCTACTCTCTAGTTGTGATACACAGGCTTCTCATTGTGGTGGCTTCTCTTGTTGCAGAGAAGAGGCTGTTGTAGACTCTTTGTTGTAGGCTATAGGTACGTGTGCTTAATTGCTCTGAGGCATGTAGGACCTTAGTTCCCTGACCAGGGATCGAACTCATGTTCCCTGTGTTGGCAAGTGGATTCTTACTCACTGGACCCTCAGGGAAGTCCCACAGGGTTTCTTAAAGTGTGGTCCCTGGACCTGCAGCATAAGCATCACCTGAAAACTTGCTTAAACTGGGACCTACTGAATCGGAAACTCTCAGGATGGGAACCCATTGGGCTGAGAGGAAGATCCCTCCAGGTGGTTCTAATGCATAATTAAGTATGGGAGCCACTGATCAATGATCTGTCATTAATTGCTCCAAGAAGGGGTGAGGGAGAAACCCCAAGTACACGTGCATGAAAATGTCCACCCCACAGAGGGACCAGGGGCCCTCCCTTACCCTTTTCTCAGCAGTTCCTTCCAAGGACTAATCAGTGGTTGTTTGTGTTCTTTAAAAAAAAATTTTTTTTATTGAAATATAGTTAATTTACAATGTTGTGTTAATTACTGCTATACAGCAAAATGACTCAGTTTTATATACACATATATAGTTTATATGTGTTTATATACATACACATATATACACGTATAGTTTCTTTATATAGGCTTCTCTGGTGGCTCAGACGGTAAAGAACCTGCCAGCAATACAGGAGACTCGGGTTCGATCCCTGGGTCAGAAAGATCCCCTGGAGAAGGGAATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATTCCATGGGCAGAGGAGCCTGGTGGGCTACAGTCCATGGCATTGCAAAGAGTGGGACATGACTGAATGATTAACAGACAAACACATATATATATATGTGCACTTTCTTTTTCATACTCTTTTCCACTGTGGTTTAATCGCAGGATATTGAATATAGTTCCCTGTGCTGTGTAGTAGGACTTTGTTCTTTATGCATTCAGTATATACCAGTTTGCATGTTTGTGCTCTCTTTGACTTATTTATTTAGATGTAGCAGGCGTGATAGTAACTTATATTTGAATATTGCTTTGTCATTTTGAAAATACTTTGATATATTTCATCTCACATGATAAAAATCACTCTGTGAAGTAGTGCAAATAAATATCATTAAAATAATATTTCAGATGAGAAGAAGGAGGCTCTGAAAGCTTAAGCAATGGTTCTGAGGTCGCCTGGTTAGAACTGTGTAGGCCCAGTACCCCCCCACCCCGACCAATCCACATTGCTCCCCAGTCCACACTGTTCACCTGGCAACTAGTTATTGCCTCTTACAACCTTTCATAAGGAAAGAGGAATTCTTGCTTTAGCGTTAAAATATACAATGAACTTCAGGCTTGTATTGGGTTGCAAAAAAATTAGTTCAGATACCAGTGAATCTGTAAAATAGATGGTAGCTTACAATCAAATATTTCATGAAGGTACCATGAAAAAAGACCGTGTTTTGGAATTATCTCTTTCTGTTTCAG
Seq C2 exon
ATTGTGTTAATGGTCAGTTTCTCCTCCCGCACCACGTCCATGGATATCCAAAGAAATTTAGAAGCCAATGTGGAAAAACGAACCAAAGACACTTATGGCCCACCCATGGGAAAACGCCTCCTGGTGTTCATGGATGACATGAACATGCCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523:ENSBTAT00000029664:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.216
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(17.9=100)
A:
NA
C2:
PF127752=AAA_7=FE(18.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development