DreINT0009125 @ danRer10
Intron Retention
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27747120-27748955:+
Coord C1 exon
chr5:27747120-27747265
Coord A exon
chr5:27747266-27748802
Coord C2 exon
chr5:27748803-27748955
Length
1537 bp
Sequences
Splice sites
5' ss Seq
ACTGTACGT
5' ss Score
6.33
3' ss Seq
TAAGTCTCACCTTTTCCCAGATA
3' ss Score
6.66
Exon sequences
Seq C1 exon
TCCCGACAGTAGACACGACTCGTGCTAATTGGCTGCTGGAGCAGATGGTGAAAGTAAAAAGGCCAGTGGTTCTGGTTGGAGAGTCCGGCACCTCTAAAACAGCCACCATACAGAATTTCCTGAGTAATCTCAATACAGACACGACT
Seq A exon
GTACGTCCACTGTTTGCTGTAAAGTCTATTTAAACTTTGCGGGCACCTGTCAGTTTTTTGTAGCTTATTTGTAGTTTATTTGAGCTTTTTTGGGGGCTTTTTTCTTTTATTTTGTCAGTCTAACTTAAAAGGAAATATCTAAAATACACTTTTATGTTCTTTTTTGTATTATGTTCATCTTAGGTCAGACAGAAAATAATAACTCTGTAAATACAATATAAATAATATAGAACATTTTTGTTTAACCATTACAGATGAGTTAAATTCATCAAACAAGAGAGTATTAGAAAAAACATAATTATACACTAAATAAGATATATATAATAATGTATGCATGTGTGTATCTACAGTTGAAGTTAGAGTTATTAGCCCCCCTTTACATTTTTTTTTTCTTTTTTAAATATTCCCAAATTTTGTTTAACAGAGCAAGGAAATGTTCACAGTGTGTCTGATAATATTTTTTTCTTCTGGAAAAAGTCATATTAGTTTTATTTCGACAAGTAAAAAAAAAGTTTTTGATTTTTTAAAATGCCATTTTAAGGTCAAAATTAATGGGCGTGTGGGGGTGTGATAATTCAGGAGGGCTAATAATTTTGACTTTAACTTTATATATAAATTCATTATTACTTTACCTTACTACTGTACTGTTAATTTAATTACATAAATCACGTTAAAATAACTCTATTCATACTTAAAACCCAGTATTTAATTTAAATAAATTAAATTCTAATGGCACTCGGCACAAATGACATTTGATGCATATGTTTTTTTTGCTTGAGGTTGCTTAAAACGTCTTTTTGATGGCAAAACTTTGACATTTTATATTTAAGGGATGGGATATTAGAATACACTTTTACATGTGTTGCTGTTTTTGTTTGTAGATTTTAATTTACAATACATTCTTCTTAAAATGTGCCCTGCACTGAGCCAAAAATCTTCAGCAGCACTTACTATACATAAATCAAACTTCACAGTTTTGTTCATATACTGTATGTATACAGAAGTTTTTTTTTTTTTCCTTTTTTTTTTTACAGAGGGATGTGTTCATGCATAATTTGGCTCATTATATACAACATTTTATTCAACAAAAAGTTATCTTTATTTTTTTCAGGCTTTTCGCTCTATTTTCTGTGTGATAAAAATAAAAAGTGATCAAACAGGTTACGAAAATCCCTTTTGTAAAAGCTTTTCACTCAAATATGTACAAATAATTAAAAAAATCATACCAGAATTATAAATGTTAATGTATCCAATGCTTTGTGCTAGAAGTGTATGCGAATTAGCATTTATTTTACATAATAAAAGATAATCTGCATAATATAACATAATCTGCATAATAAAACATAATCTTGTAATACAAAAATGTCAATCAATTGTGTAATCAATCAACTGGGGAAATTCAGTGAAAACCGATTGTTTTTATTTTAAACATTTTTTTTTTGCCTTAATTAACAGCATCATTATAAGTAAAATATAATAAACTACAATAATGAATATAATATAACAAATTAGTATAATAAGTCTCACCTTTTCCCAG
Seq C2 exon
ATAATGATGACCATCAATTTCTCATCAAGAACAACCTCTATGGACCTGCAGAGGACTCTGGAGGCAAATGTTGAAAAGAGAACCAAGGACACGTTTGGTCCTCCTATGGGCAAAAGGCTCCTTGTCTTTATGGATGACCTCAACATGCCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486:ENSDART00000135878:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.176
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(17.6=100)
A:
NA
C2:
PF127752=AAA_7=FE(18.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCGACAGTAGACACGACTC
R:
TTGGCATGTTGAGGTCATCCA
Band lengths:
297-1834
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]