MmuINT0050608 @ mm9
Intron Retention
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125278276-125279412:+
Coord C1 exon
chr5:125278276-125278421
Coord A exon
chr5:125278422-125279259
Coord C2 exon
chr5:125279260-125279412
Length
838 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
CACCCTCTGCTCTGTGACAGATT
3' ss Score
9.11
Exon sequences
Seq C1 exon
TTCACACAGTGGATACCACCCGCACCACCTGGATCCTGGAGCAGATGGTTAAAATCAAGCACCCTGTTCTTTTTGTGGGTGAATCCGGCACTTCTAAGACAGCCACTACCCAGAACTTCCTCAAAAACCTGAACGAGGAGACCAAT
Seq A exon
GTAAGTGTCCATCTGTATTAGCTACCAGTTGCTGCGTAACAAGTTACCCCCATACCAGTAAGGTCGCCGACCTTTATTATCTCTCATTTTCCATGGGTCAGGAATTGTTAAGTGGCTTAGCTGGGTAACTCAGGTTCTCTCCTGAGATTGTAGTTAAGTGTCGGTGAAGGCTGTGTTCATTTGAAGGCCTGGCTGGGGCTGGATAAGCATCTGCTAAGATGGCATTTCATGTGGCTGGAGGCCTCAGATCGTCACTATGCGGACCTCTCCTAGGAATGCCCGATTGTGCTTGTCTTAGACTCGAGACCTGGTAAGTTACAAAGACTAGAAGTTTACTTGACCCAGCTCTTGGGGCTCAGCTAGTCCAAGAGCATGGTGATGCTGTCTGACCTGAAGGAGAGGGCCTTCTTGGTACAGGGCAAATATAGTGGAAAACATCACATGGTGAGAAAGAGAGAGCCTGCCAGAGAAAGTCCCACCTTCATAACAGAAAAGAAAAGCCACTTCTTTAGAACCCCTGAGCCTGTTTCTCTGCAAATGGCTCGATACACGTTTGAGAGCCCTCCCATTCCCTATCCAACCATCCCCCAGAGGCCCCAGGAGCCTCCAAGGCTCCTGAGTAAATAAGGACACAGGATATGCTTGTTGTTGAGACAGGGTCTCATTGTGTAGACTGGGCTGGCCTTGAACTTACAGAGATCCTCTTGCCTCTGCCTCCTGAGTGTGCAGCTGTAACAGGCCTCAGCTGTAGTACTTAAACGATGAACACAGACCTGCACCCCTTCTGGAAACGGTAGTTTGGAAACCAGTTGTTATACCACCCTCTGCTCTGTGACAG
Seq C2 exon
ATTGTTCTGATAGTCAACTTCTCCTCTCGGACCACATCCCTGGACATCCAGAGAAATCTGGAAGCCAATGTGGAGAAGCGGACTAAGGACACGTATGGGCCGCCCATGGGGAAGCGCCTGCTGGTGTTCATGGATGACATGAACATGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-Dnahc10:NM_019536:45
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=NA C2=0.117
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(17.8=100)
A:
NA
C2:
PF127752=AAA_7=FE(18.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATACCACCCGCACCACCT
R:
TTGGCATGTTCATGTCATCCA
Band lengths:
286-1124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: