GgaINT0008952 @ galGal4
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4879097-4879792:-
Coord C1 exon
chr15:4879647-4879792
Coord A exon
chr15:4879250-4879646
Coord C2 exon
chr15:4879097-4879249
Length
397 bp
Sequences
Splice sites
5' ss Seq
TATGTATGT
5' ss Score
3.25
3' ss Seq
CTATTTCGTCCCCTTTGCAGCTT
3' ss Score
9.86
Exon sequences
Seq C1 exon
TGCCTACAGTGGATACAACACGCACTACTTGGTTGCTAGAACAGATGGTAAAAATAAAACGCCCAGTTGTTCTTGTAGGTGAATCCGGTACCTCTAAAACAGCAACGACGCAAAACTTCTTAAACAGTCTGAATGAAGACCTTTAT
Seq A exon
GTATGTATGAGGCATTTTGCCGTGTTGTTTATAAAGCTGCATTTTCATTTTGTAACCTTGTGTTAAATTTCTGTTCTGAAGCCTGAGCCTGTGGGTAGCAGTATTGACTTTGAGACCTCTTGTGGGTTCAGAGATCTAACTGCAAGCTCAGGCCCAAATTGTATGAATGATATGAGAACTCTTAAAGAACAGGAATATTTTGTTCTTTTACTTTATCAAAGATTTAAGAAGAATTTTACTTTTTTGGTGTGTGTAATTCAAGTGAGTAACTGAACCAGAGGAGTGTTTCTGGTATGTCTGGCAATTTAATACAAAGAATATTTTCTAGAATGCTCTAGTTTGGAGGGAGGAAAAAAAAGGTAAAAATCCATTCTTATCTATTTCGTCCCCTTTGCAG
Seq C2 exon
CTTCTCCTAGTGATTAACTTCTCTTCCCGTACAACATCAATGGACATTCAGAGAAATCTAGAGACAAATGTAGAGAAACGATCTAAAGACGCTTATGGCCCTCCTATGGGAAAGCGTCTCATTATTTTCATGGATGATCTGAATATGCCGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.157
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(17.6=100)
A:
NA
C2:
PF127752=AAA_7=FE(18.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATACAACACGCACTACTTGGT
R:
CCTCGGCATATTCAGATCATCCA
Band lengths:
289-686
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]