BtaINT0050200 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54095975-54097018:-
Coord C1 exon
chr17:54096851-54097018
Coord A exon
chr17:54096164-54096850
Coord C2 exon
chr17:54095975-54096163
Length
687 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
ATTTTTGGTCTAAAATTCAGGAA
3' ss Score
5.37
Exon sequences
Seq C1 exon
GTCCAGGAGCACATAAGAATCTTGGTCACGGCACATTTTAACGATGATGTGGAGGTGGTGATGAGGGACCCCATCCTGTTTGGAGACTTCCGGACAGCTCTGCATGAAGAGGAAGCACGCATTTATGAAGATATTCAGGATTATGAGGCAGCCAAGGCTTTGTTCCAG
Seq A exon
GTGCGGACGGGGCTCACCTCTCCCAGGATTATATTACATGGGTGCCCAGGAGGTGGAGCTGGGGAGAACGACGTGCCTGTCTGTAACTTGGGAATGTGGGCTTGTGTCTGACCCAGTGGTGTCCACGTCCTGTGGTGCATGTCAATGACCTGATGAATTTATTCATTCAGACCCCTGGGACCCATCTTCATACGTTTCCCTTCATCAAACCCATGGAGGGTGCCAGGGTTCTGGTGCACACCCAACTTTGGGAACCCCTCATCTGATTCCCTAATGTTCATTTTCATCTTAATTCATAAGGCAAGCCTTGTGGTCATCTTTGGCTTACTGCTGGCTGATCACAGACCAGCAGATCGAAATCTTTTTAAATTTTATTTAATTTAGTCAGTTTATTTTGGCCATGCCGTGCAGCATGAGGGTTCTTAGTTCCCTGACCAGGGATCGAACTCATGACCCCTGCATTGGAAGCTCAGCGTCTTACCCACTGGATGCCTGGGATGTCCCGCAGATTGAAATCTTGTTTGTGAAAGTTAGTCTTGTGAACCCAAATGATTTACTCATTTCAACCACTATTGACATTCAAAACAGTCTCTCCTCCATTTTTAATCTCTCCTGCACAGAAGAGAGAGTCTGTCTCTTAAAAGTCAGTGGTCCTTAAAAAAATTTTATTTTTGGTCTAAAATTCAG
Seq C2 exon
GAAATCCTTGAAGAGTATAATGAAAGCAACACCAAAATGAACTTGGTTCTCTTTGACGATGCTCTGGAGCATCTGACCCGTGTGCACCGCATCATTCGAATGGACCGAGGCCACGCCCTGCTGGTTGGGGTTGGGGGCTCTGGGAAGCAGTCTCTGGCCAGGTTGGCTGCCTTCACAGCTGGCTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523:ENSBTAT00000029664:50
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127802=AAA_8=PU(21.3=90.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAATCTTGGTCACGGCACA
R:
CTCGTAGCCAGCTGTGAAGG
Band lengths:
343-1030
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development