HsaINT0049257 @ hg19
Intron Retention
Gene
ENSG00000197653 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:2941]
Coordinates
chr12:124364181-124366360:+
Coord C1 exon
chr12:124364181-124364348
Coord A exon
chr12:124364349-124366171
Coord C2 exon
chr12:124366172-124366360
Length
1823 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
TTTTTTTTTTTTAAATGCAGGAA
3' ss Score
9.39
Exon sequences
Seq C1 exon
GTACAACAGCACATAGGCAGCTTGGTTGTGGAACATTTTAAAGATGACGTGGAGGTGGTGATGAGGGATCCCATATTGTTTGGAGACTTCCAGATGGCTCTGCACGAAGGAGAACCACGCATTTATGAAGACATCCAGGACTACGAGGCGGCCAAGGCTCTGTTCCAG
Seq A exon
GTGGGGATGAGCCCCACCCTGTCCATGGGCTCACTTTCTCCTGAGCATGGGCCAAGCGGGAGCTGAGCATCGCGCGGGTGCCCGGGAGCCTATCACCTGGGGCTCTGTCTGAGGGCTTGAAATACGGGCTTGTGTCTGGTCCGGTGGTTCCCACATCCAGCATGCTTGGGAGTGACGTTAGGAAATTGTTAGACTCCTGGGGCCACCCCGTGAGATTTGCTGCGCTGGGCCCATGGAGGGTCCCCAGATTCTGGTGCACAGCCAGGTTTGGGAACCACTTGTTTGACTCCCTAATATTCATTTTCATTTAAATTCATGAGATGAGCCTTGTTACCGGCTTTGGGTCGCTGCTGGCCAATCAAAGCCCAGCAGATGGAAATCTCGATTGTGAAAGCTAGATTAGTCCTGGAGACCCAAGCAGTTTAATTATTTTAACTACTATAGATGTTCAGAAAAATCTCTCTTCCATTCTTAATCTCCTCTGGACAAAAGGAGGGAGTCTGTCTCTTAAAATCCAGTGATCCTTTAAGACATTATTTATTTATTTATTTATTTTGAGACAGGGTCTCTCTCTGTCACCCAGGCCACAGTGCAGTGGTACGATCACGGCTCTCTGCAGCCTCAACCTCCTGGGCTCAAGTGATCTTCCTGCCTCAGCCTCTGGAGTAGCCGGGACTATGGGCACACATCACCGTGCCCAGCTGATTTTTTTGTTTTTATTTTTGTAGAGACGTAGTCTTGCTCTGTGGCCCAGGTTGGTCTCGAACTCCTGGGCTCAAGTGATCCTCCCTCCTCAGCCTCCCAAAGTGCTGGGATTATAGGCATGAGCCACTGTGCTGGGTTTTAAATTCTCTTTTTTTTTTTAATGCTTTAAATTCTAGGGTACATGTGCACAACATGCAGGTTTGTTACATACGTATACATGTGCCATGTTGGTGTAGTGCACCCATTAACTCGTCATTTACATTAGGTGTATCTCCTAATGCTATCCCTCCCCCCTCCCCCCACCCCACAACAGGCCCTGGTGTGTGATGTTCCCCTTCCTGTGTCCATGTGTTCTCATTGTTCAATTCCCACCTATGAGTGAGAACATGCGGTGTTTGGTTTTCTGTCCTTGCAGTAGTTTGCTGAGAATGATGGTTTCCAGCTTCATCCATGTCCCTACAAAGGACATGAACTCATCCTTTTTAATGGATGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCCAGTCTATCATTGATGGGCATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGAGTAGTGCCGCAATAAACATACGTGTGCATGTGTCTTTATAGCAGCATGATTTGTAATCCTTTAGGTATATGCCCAGTAACGGGATGGCTGGGTCAAACACTATTTCTAGTTCTAGATCCTTGAGGAATCGCCACACTGACTTCCACAATGGTTGAACTAGTTTACAGTCTCACCAACTGTGTAAAACTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTGTTTCCTGACTTTTTAATGATTGCCATTCTAAGTGGTGTGAGATGGTATCTCATTGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTTTTCATGTGTCTTTTGGCTGCATAAATGTCTTCTTTTGAGAAGTGTCTGTTCGTATCCTTCGCCCACTTTTTGATGAAGTTGTTTGATTTTTTCTCGTAAATTTGTTTAAGTTCTTTGTAGATTCTGGATATTAGCCCTTTGTCAGATGGGTAGATTGTAAAACCCACCATGCTGGGTTTTGAATTCTTTTTTTTTTTTTAAATGCAG
Seq C2 exon
GAAATTCTTGAAGAGTATAATGAAAGCAACACCAAAATGAACTTGGTTCTCTTCGACGATGCTCTGGAGCATTTAACCCGGGTGCACCGTATCATCCGCATGGACCGCGGCCACGCCCTGCTGGTCGGGGTAGGGGGCTCAGGGAAGCAGTCTCTTTCGAGGCTGGCTGCCTTCACAGCCAGCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-DNAH10:NM_207437:49
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127802=AAA_8=PU(21.3=90.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATAGGCAGCTTGGTTGTGG
R:
CAGCTGGCTGTGAAGGCA
Band lengths:
343-2166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)