MmuINT0050614 @ mm9
Intron Retention
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125284184-125285190:+
Coord C1 exon
chr5:125284184-125284351
Coord A exon
chr5:125284352-125285001
Coord C2 exon
chr5:125285002-125285190
Length
650 bp
Sequences
Splice sites
5' ss Seq
GAGGTCTGT
5' ss Score
5.39
3' ss Seq
CAGGAATGCTCTCCACTCAGGAA
3' ss Score
4.22
Exon sequences
Seq C1 exon
GTGCAAAATCACATAGGGAACTTGGTGACGGAGCATTTTAACGATGACTTCGAGATGGTGATGAGGGATCCCATCCTGTTCGGGGACTTCCGGTTGGCTCTGCAAGAGGGGGAGCCACGCATTTATGAAGACATCCAGGACTACGAGGCCGCCAAGGCACTGTTTGAG
Seq A exon
GTCTGTCTTGCCCTCCCAGGACAAGACGCACACCCAGTTTGGAGTGTGTTCGGGGACTCCAGTGGCTCTCTTGTCTGTAATGGGCTATGGCTCGCTCTAGCAGGCTGACACCCAATAGACTCACGATTTATTTGATTTGATTTGATTGATTAATTGATTGAGACAGGGTTTCTCTGTGTAGACCAGGCTAGTCTCTAACTCAGGGTTCTGCCTACCTCAGCCCCACCCCCCAAGTGCTGGGATTAAAGACTTGGCTAGATTCATTTTATTTTTAATTATGTATGTGGTGTGTGTGTGTGTGTGTATTTGTGTGTGTATACATGTGAGTGCAGGTCCCCGTAGGGGCCAAGAGAGGCTGTTGGAGCCCCTGGGGCTGGACTTACAGGCACTTGTGAGCCACCTGATGTGCATGCTGGAACTACACTTGGGTCCTGAGAAGAGCAATACCTCCCAGCTGAGCCATCTCTCCTGCCCTGCCCTCAGCCTATGTCTGGCCCACTTTAGTTCCTGGCCCCACACATCTTAAGGATTGCCTTACTTCCTTAGCCATGGGTGCTTGGGAAAGACAGCTCTTATCACTCTCTTTCCCGGCGAGAAGGAGAGAGTCTGCCTCTTAAAATGCTGCGGGCTCAGGAATGCTCTCCACTCAG
Seq C2 exon
GAAATCCTCGAGGAGTACAACGAAGTCAACACCAAGATGAACCTGGTGCTGTTTGACGACGCGCTGGAACACCTGACCCGCGTGCACCGCATCATTCGGATGGACCGAGGCCACGCATTGCTGGTGGGTGTGGGTGGCTCCGGGAAGCAGTCGTTGGCTAGGCTGGCGGCCTTCACCGCAGGCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-Dnahc10:NM_019536:50
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127802=AAA_8=PU(21.3=90.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGGAACTTGGTGACGGAGC
R:
CTCACAGCCTGCGGTGAAG
Band lengths:
344-994
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: