GgaINT0008957 @ galGal4
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4875925-4876589:-
Coord C1 exon
chr15:4876422-4876589
Coord A exon
chr15:4876114-4876421
Coord C2 exon
chr15:4875925-4876113
Length
308 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
3' ss Seq
CTGATCACCTTTCTCTGCAGGAG
3' ss Score
10.18
Exon sequences
Seq C1 exon
GTACAAGGACATATCAAAAACCTGATTGAAGAGAATTTCAACGATGAGTTGGAACAGGCTATGAGGGATCCTATTCTTTTTGGAGATTTCAGGATGGCACTGAATGAAGGAGAGCCTCGTATTTATGAAGATATACAAGCCTATGATGTGGCAAAAAATCTCTTTCAG
Seq A exon
GTAGTGTGCTTCAACTTGGAACTGTGTGTGATTTTTGTGTCTTTGCGTGAGGAAGAGTAAGGAAATTGCATCAAACAAGGTGAAATCAGTTCTTCTATGCACACGTACAGCAGTGTGCACAGAAGACTCTCATTTGGCATCTGCAGTAATGGAAATTGAGGGTCAGCTATGGAGTTTGCAGTGCTTTCCAATTATTTATTTTCCTTGATGACCTTTTCAAGAAATAATGCAGCTAAATGGGTTGTTATTTTATTAATGCTATTGTTTCCTTGGTCTCCTAGCAACATTCTGATCACCTTTCTCTGCAG
Seq C2 exon
GAGATTTTGGAGGAATATAATGAGGTTAATCTTAAAATGAATCTAGTTCTTTTTGATGATGCTTTGGAACATTTAATCCATGTGTATCGCATCATACGGATGGATCGTGGCCATGCCCTACTCATAGGAGTTGGAGGCTCAGGAAAGCAGTCTCTTACGAGATTGGCTGCCTTTACAGCTGGATGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:49
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127802=AAA_8=PU(21.3=90.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGGACATATCAAAAACCTGATTG
R:
TGTAAAGGCAGCCAATCTCGT
Band lengths:
343-651
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]