DreINT0009131 @ danRer10
Intron Retention
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27752228-27752667:+
Coord C1 exon
chr5:27752228-27752392
Coord A exon
chr5:27752393-27752478
Coord C2 exon
chr5:27752479-27752667
Length
86 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAT
5' ss Score
4.89
3' ss Seq
TCTTCCTCTGACTCATGTAGGAA
3' ss Score
8.21
Exon sequences
Seq C1 exon
GTCCAAGGACATGTAAAGAATCTGGTTGAAGAACACTTCAAATCAGACCTGGATTCAGCCATGAGAGATCCAATTCTGTTTGGCGATTATAGAACAGCTCTTAAATCTGAGCCAAGGGTTTATGAGGATATACTGGACTATGATGCATCCAAAGCTCTGTTTCAG
Seq A exon
GTGCATGGGGGTCTTATTTGCTCCACTTACTGTATATTTACATTATGGCACATTAATGCCATCTGTTCTTCCTCTGACTCATGTAG
Seq C2 exon
GAAATCCTGGAGGAGTATAATGAAAATAAGACAAAAATGAACTTAGTGCTGTTCGATGATGCACTTGAACACCTGACTGTCATTCATCGCATTATTAGAATGGATCGAGGTCATGCATTGCTGGTTGGTGTAGGTGGTTCAGGGAAACAGTCTCTTACAAAGCTGGCTGCCTTCACTGCAGGTTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486:ENSDART00000135878:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127802=AAA_8=PU(21.3=90.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAGCCAAGGGTTTATGAGGA
R:
GCAATGCATGACCTCGATCCA
Band lengths:
181-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]