BtaINT0050217 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54055137-54055799:-
Coord C1 exon
chr17:54055695-54055799
Coord A exon
chr17:54055292-54055694
Coord C2 exon
chr17:54055137-54055291
Length
403 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
GTCTCTCCTATTGTCATTAGGAA
3' ss Score
7.1
Exon sequences
Seq C1 exon
GGTTGTTTGAGAGGCACAAGTTACTTTTTTCTTTCAATATGACTATCAAGATAGAACAAGCAGAGGGGAGAGTCCCCCAGGAAGAATTAGATTTCTTCTTGAAAG
Seq A exon
GTAATGAGCTTGTCTCGTTTCATGCTTTCCAACTCCCTGGACCCACAGTGTACACGCATAGGAGTTTGTTCACTAAACGACAACAGTAATTTTCCATCCTTAAAACCTGACTTCCAGTAGCACTGCTTTAGTAAACATCTCAGTTGACAGTTCCAGCCTCAGATATGGCTCGAGTTAATTTAGAGCAACCAGGCTCTGCCTTAAGGCTACCCTGAGACTGGAAACCACTCAGAGCTTCCTGGCTGGAGTCACAGACAGTGAAGAGGAAGCCAATGCCCCCTTCTCTTTCCAACCCATTTTGAGAAGTGAATTTCCCCCAAAGTGAGAGAAGTCCCAGTATAGAGCTGCTTGCACTTCCTGGTGTGTTGATGTCAGCTGTTTATGTCTCTCCTATTGTCATTAG
Seq C2 exon
GAAACATTTCCCTGGAGAAAAGCAAACGAACCAAGCCCTGTGCTTGGTTGTCTGACCAGGGATGGGAAGATATCATGCTTCTGTCAGAGGTATTTCCGGACAACTTTGGGAATCTTCCTGCTGATGTGGAGAAACATCTGACTGTCTGGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523:ENSBTAT00000029664:66
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0302810=Dynein_heavy=PU(6.6=90.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGTTTGAGAGGCACAAGT
R:
TCCTGCCAGACAGTCAGATGT
Band lengths:
259-662
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development