HsaINT0049275 @ hg19
Intron Retention
Gene
ENSG00000197653 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:2941]
Coordinates
chr12:124408310-124408979:+
Coord C1 exon
chr12:124408310-124408414
Coord A exon
chr12:124408415-124408824
Coord C2 exon
chr12:124408825-124408979
Length
410 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TTCTCTTCTGTTGTGATTAGGAA
3' ss Score
9.18
Exon sequences
Seq C1 exon
GGCTGTTTGAGAGGCACAAGCTACTCTTTTCTTTTAATATGACCATCAAGATAGAACAAGCAGAAGGGAGAGTCCCTCAAGAAGAACTAGATTTCTTTTTAAAAG
Seq A exon
GTAATGAATTTGCCTAGCTTCATTCCTCCCATCTCCTTGCCCACATGATACATGTATATAAGTTTGTCTGTTGAAACAAACAATAACAAAAATTCTCCTTAAAACTTGGCTTCCAACAGCACTGCATTTTTCACTATTCCAGTTGATCATTCCAGCCTCAGAAATGGCTCTGGTTGAAATCGGAGCAGCCAGCCTCTGTCTCGGGGCCATCCTGAGGCTGGAAGCTGGATGCTGCACTGAGCGCCTGGTTGGTGTCACTGGCGGTGACGAGGGCAAGCCTGGGCCACTTCCTGTTTCCAGTCTCCTTCTTGAAAAGTGGACTTTTCCCAAAAGTGGGAGAAGTCGAAGCAGAGTTGCTTGCTTTGTGTTAGTGGTACAATGGCTGCTTGCTTCTCTTCTGTTGTGATTAG
Seq C2 exon
GAAACATTTCCCTGGAGAAAAGCAAAAGAAAAAAGCCCTGCGCTTGGTTGTCTGACCAAGGATGGGAAGATATCATTCTTTTATCAGAAATGTTTTCAGACAACTTTGGGCAACTTCCTGATGATGTTGAGAATAATCAGACTGTCTGGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-DNAH10:NM_207437:65
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0302810=Dynein_heavy=PU(6.6=90.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTTTGAGAGGCACAAGCT
R:
AGACAGTCTGATTATTCTCAACATCA
Band lengths:
251-661
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)