DreINT0009148 @ danRer10
Intron Retention
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27767202-27767555:+
Coord C1 exon
chr5:27767202-27767306
Coord A exon
chr5:27767307-27767400
Coord C2 exon
chr5:27767401-27767555
Length
94 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGA
5' ss Score
5.64
3' ss Seq
CCCATCTTCTTCTTTTCTAGGTA
3' ss Score
12.76
Exon sequences
Seq C1 exon
GTCTGTTTGAAAGACACAAACTTCTCTTCTCCTTCAACATGACTATTAAGATAGAGCAGGCTGAGGGCCGAGCACCACAAGATGAACTGGAGTTCTTTTTTAAAG
Seq A exon
GTTGGAGCTTCAGGAAGCCTTGTCTGCTTCTGTTTCTCTCTCTTTTACAGTATAAATAATGCGCATAAACACATCCCATCTTCTTCTTTTCTAG
Seq C2 exon
GTAACCTCTCTCTGGAAAAGAGCAAACGTAAGAAGCTGTTGGACTGGCTGCCTGATCAAGGTTGGGAGGATATTATACGCCTCATGGAACTCTTTCCTAATGAGTTTGGCACTTTAGCTGATGATATAGAGAAGAATCCTGAGGAATGGAAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486:ENSDART00000135878:57
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0302810=Dynein_heavy=PU(6.6=90.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATAGAGCAGGCTGAGGGC
R:
TCAGCTAAAGTGCCAAACTCA
Band lengths:
179-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]