GgaINT0008973 @ galGal3
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4910306-4911056:-
Coord C1 exon
chr15:4910952-4911056
Coord A exon
chr15:4910461-4910951
Coord C2 exon
chr15:4910306-4910460
Length
491 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TGGTTTCTGAATGTGACTAGGCA
3' ss Score
4.36
Exon sequences
Seq C1 exon
GCTTGTTTGAGAAGCACAAGTTATTGTTCTCCTTTAATATGACTGTGAAGATAGAACAAGCTGATGATAGAGTTCCCCATGAAGAACTTGACTTCTTTTTAAAAG
Seq A exon
GTAATGTGAACATATTTGTATAGAAATATACATGTGGTGGTAGCTAGAAGGTCTTGTGAAGATTGATTTTGACTAAGTGTGAGTTGTGATAAGAGATAGCACAAGAAGTCAGCTGGAATATGTTAGTTTACATGGACTGAGGATTTTGCTATTGCTATTTTCACTTTGTTAAACAGTCAAGAGGTGAATCTCTTTTCACTATAAAAGCTGTCCAATCTTGTGTTAGCTACAGATAATGGGGATGTAACCAGATAAAATAATCTCTAGTTATTTTCTAACTACTTATCAATAGAAATGTTTGCAAAGATACAACTTTGGCTTTTGCAAGCACTTTTAAAACGCTGTGTTTACTTCAGCAGACCAGTTTAATATCACAGTGCTTCCAGAAACAAATTTCCAAATGGTTTCTCTGTGTGATGGGACTGTATGTGTGGTCATGGACCAGAGAATTTACGACATGGACGTTCACTTTGGTTTCTGAATGTGACTAG
Seq C2 exon
GCAATATTTCCCTGGAGAAGAGTGCACGAAAGAAACCATATGCTTGGCTTCCAGATCAAGGCTGGGAAGACCTAATTCGCTTGTCTGAACTGTTTCCTCAGCAATTTGAATCTCTTCCAGATGATGTGGAAAAAAATCCAGATGTATGGAAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:61
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0302810=Dynein_heavy=PU(10.9=90.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGTTTGAGAAGCACAAGT
R:
TTTTCCACATCATCTGGAAGAGA
Band lengths:
238-729
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]