BtaINT0050221 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54172726-54174777:-
Coord C1 exon
chr17:54174620-54174777
Coord A exon
chr17:54172957-54174619
Coord C2 exon
chr17:54172726-54172956
Length
1663 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TGTTTGTGTGCTCATCACAGGGT
3' ss Score
7.17
Exon sequences
Seq C1 exon
GTGAGATCAAGTTAGAAATGCCAAGCATCAGCGTAGAGGGAGAGGTATCTGATCTGGCAGCTGACCCAGAAACAGTTGAAATTTTGGAGCAATGCGTGATAAACTGGTTGAATCAGATATCTACAGCCCTTGAGGGCCAGATGAAAAAGACACCACAG
Seq A exon
GTAAGGTGTGCAATGCTTTTGCAGATCCCTAATCCAGTTCATGGAACAGCAGACTGGTTCCAAATAGGAAATGGAGTACGTCAAGGCTGTATATTGTCACCCTGCTTATTTAACTTATATGCAGAGTACATCATGAGAAATGCTGGACTGGAAGAAACACAAGCTGGAATCAAGATTGCCGGGAGAAATATCAGTAACCTCAGATATGCAGATGATACCACCCTTATGGCAGAAAGTGAAGAGGAACTAAAAAGCCTCTTGATGAAAGTGAAAGTGAAGAGTGAAGAAGTTGGCTTAAAACTCAACATTCAGAAAATGAAGATCATGGCATCCAGTCCCATCACTTCATGGGAAATAGATGGGGAAACAGTGGAAACAGTGTCCGACTTTATTTTTTGGGGCTCCAAAATCACTGCAGATGGTGACTGCAGCCATGAAATTAAAAGATGCTTACTCCTTGAAAGGAAAGTTATGACCAACCTACATATCATATTGAAAAGCAGAGACATTACTTTGCCAACAAAGGTCCATCTAGTCAAGGCTATGGTTTTTCCTGTGGCCATGTATGGATGTGAGAGTTGGACTCTGAAGAAGGCTGAGCGCTGAAGAATTGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCCAACCAGTCCATTCTGAAGGAGATCAGCCCTGGGATTTCTTTGGAAGGAATGATGCTAAAGCTGAAACTCCAGTACTTTGGCCACCTCCTGCGAAGAGTTGACTCATTGGAAAAGACTCTAATGCTGGGAGGGATTGGGGGCAGGAGGAGCAGGGGATGACAGAGGATGAGATGGCTGGATGGCATCACTGACTCGATGGACGTGAGTCTGGGTGAACCCTGGGAGTTGGTGATGGACAGGGAGGCCTGGCGTGCTGCGATTCATGGGGTCGCAAAGATCTGGACATGACTGAGCGACTGAACTGAACTGAATCCAGTTTATGCTTGCCATCCTGAGAAAGAGCCAAGAATCTTGGAATCTGTGTGATCTAGCCTCTTTTCTTACTGTTTTGTGACCTTCTTAAAAATATTAAAGTAAACATACCTGAGATGTCATTCTTGGGCTTTCTAAGATTAGTGTGCTACCAGATGTCTCCTGATATTGATAAAGATAACACAGATATATCAGTCAGGATGTTTGAGCTGGAAAAAAAAAAAAAAACCCAGGAAATCTAACTAAGCTGGCTTAAGCAAGAAAGAGGATTTATTGGCTCACTGAAAAGTCCAGAGGGCAATGCTGGTTTCAGATACAGTTGGATCAGGACTCTGGCAATCTAGCTGGGTTCCTCTGTAAATTTCTTGGTTCCAATCTCCTCTCTGAGTGGGCTTCCTCCTCGGACTGGTCTCCTTCATGGTGACAACTTGTAGCAGTTTCTGACTCCACATTCCCACACCACTTTGTCCAGAGAAAGATGGAGTGTCTAGCGTTCCCAACTGGAGTCCTGAGATTCCCTCTGATTGGACCATCCTAGGTCAGGTGTCTGCCCCTCAAGTTCTTGCATGGGTTAGCTCCTAAATATAGAGTCTTTGGGAAGAGAGGCGTGGATGCTGGAGGAGCAACCAGTGTCCATTCCCCACTAATGATGATGATGTTTGTGTGCTCATCACAG
Seq C2 exon
GGTAATGGTCCTCTGGCTGAGATTGAATTCTGGCGGGAAAGAAATGCCACCCTAAGTGCTCTGCATGAACAAACAAAGCTTCCAATAGTCAGAAAAGTCTTGGATGTGATGAAGGAGTCAGATTCATTGCTTGTGGCCAACTTGCAGCCCGTCTTAACTGAATTGTTCAAGTTCCACATGGAGGCCTCAGACAACGTGAGGTTTCTTTCCACAGTGGAACGTCATTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523:ENSBTAT00000029664:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.113 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PU(10.3=58.5)
A:
NA
C2:
PF083857=DHC_N1=FE(25.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAGCGTAGAGGGAGAGGT
R:
ACTGTGGAAAGAAACCTCACGT
Band lengths:
348-2011
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development