MmuINT0050635 @ mm9
Intron Retention
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125214817-125217403:+
Coord C1 exon
chr5:125214817-125214974
Coord A exon
chr5:125214975-125217172
Coord C2 exon
chr5:125217173-125217403
Length
2198 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTC
5' ss Score
6.49
3' ss Seq
TGCGCTCATGTCTCTCTTAGGGC
3' ss Score
10.1
Exon sequences
Seq C1 exon
GTGAGATCAAACTGGAGATGCCCAGCATCAGTGTGGAGGGAGACATGTCAGAGCTGGTGTCCAATCCAGAACTGGTGGAGAATTTGGAGCAGTGCGTGATCCACTGGCTGGGCCAGATTTCATATGCGCTGGATTCCCAGATGAAGAAGAAGCCCCAG
Seq A exon
GTATTCTGTGCAGAGGGGCTTGGAAGGAGCCTGGCGCAGGTCACACCCAGCACCCCAAGGAACAGGTCTCTTTTTCTTCCTGTTGGAGACTTCCCTAAAAGATGCTGTGGGTGAGGACGTCGGAACATTGCCTTTGTTCAGGTGCTCTCAGATCGCTGTCTGGAGTGACAGAGCTTATCCTGTCTTAGTCCCTGCCCTATTGCTGTGAAGAGACACCAAGACCAAGGCAACTTGTAAAAGAAAGCCTTTAACTGGAGGCTTGCTTACAGTTTGAGGGGTTTAGTTGATTAGCCTGGTAGAAACAGGGCAGCAGGCAGGAGTGGTGCTAGAGAAGCAGCAGAGAGAGCTATATCCTGCCGGGCAAGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTCTTGAGATACTGAGAATGGCTTAGGTTTTTGAAAACTCAAAGCCCACCCCACCCCCACTCCCACCCCCACCCCCCCACCCCCCACCCCCCACCCCCCACCTCCACAGCATACCAACAGGGCTACACTTCCTAATCTTTCTTTCTTTTTCTTTTCTTTTCTTTTTTTGTTTTGTTTTTGTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCTTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACCGCCACCCGGACCCTAATCTTTCTTAACCGCTGCCACTCCCCGATGACTAAACATTCAAACCCAAGAGTCTATGGGAGCCATTCTTATTCAGACCACCATGGGCTGAGCCAGCTGGGCTGCCATCCCTAGGAACCCAAGTCAACTGTTTGAAATAAGAAAGCAAGTTGTGTGAGGACTTGGTGGTCCAGGCTTTCAGTCCCAGCATTCTGGAGATAGAGGCAAGCTATCTTTGTGACTTCAAAGCAATCCCAACTGTGCTGGCTCATTTTTCCATCAACTTGGCACAAGCTTGAGTTGTTTTGGAAGAGGGAACCTCAACTGAGAAAATGCCCCCAGTAAACTGGCCTGTGGGCAAGCCTGTGGTACCTCTTCTTGATTGATGATTGATGGGGAGGGCCCAGCTCATTGTAGGTGGTGCCACCCCTGGGTAGGTGCTCCTGGGAGATATGAGAAAGCAAGCTGAGCAAGCTATGAGGAGCAAGCCAGTAAGCAACATTCTTCCATGGCCTCTGCTTCAGGTCCTGCCCCACTTTTCTCCAGGTTGGACTTGCTGGGGAACCGTAAACTGACATAACCCTTTCTTCCTCGAGCTGATTTGGTCTGTGGTGTCTTATCCCAGCAGTAGATGCCCCAAGACACCGGTCTACATAGTGAGTTCCAGGTCAACCAGGGCTACCCGGTAAGACCTGGTTTCAAAACAAAAAAGTTAAAAGAAAAATTGAAACAAGATAGTTCCTGCTGAATGACACCCAAGTTTGAACTCTAGTCTACATGAGCATGTGCATGCACGCACACACACTTTTCCTGACACAAGCACACACACTCATGTGCACACACTTACATGCATACACACATATACATGTTCAATGCACACATGATCACAAACACATGCTCTCTTTTTTCTGTCACGAACACACATACATGTTCATGTGTATACATGAGCACACATACACACACCTGTAACACGCACATAATCACATACATTCTCACAAAGTAGACACATACTCATGTATATGCACACATATACATATATACACACTCACAAGAATACATGCGCACACACTTGTGTTTATACACGAGCTCACACACACATATATGTGTATGTATATATACATATACATATACATATACATATACATATACATATACATATACATATACATATACATATACATATACATATACATATACATATACATATACATATACACCTGTGCAATATACTGGCACACTTTCTGAGTTTCTTCTGTGGGGCTTTATCCTTTGTAGTGACAGTTTCTGGCACTGTGGGTGCGCCAGGAAAGGCAGGGTGCTGTCTTGCATTCCCAGTAGGGTCCTGAGGTCCATTCTGATTGAACCATGCAGGACGAGGAGGAGTCCGCTTGGAAGCGCTCTACTGACTCCCCGCTATGTGGAGCAGTTGGGACAGCGGCACTGGGGAAATGACCATGTGTTATCTGTGCGCTCATGTCTCTCTTAG
Seq C2 exon
GGCAATGGCCCTCTGGCTGAAATCGAATTCTGGAGAGAGAGAAATGCAACGCTGAGCGCCCTCTACGAGCAGACGAAGCTTCCATTTGTTAGGAAGGTCTTAGAGGTGATCAAAGAAGCAGAGTCCATGCTCACGGCCAATGTGCAGCCTATCCTGACGGAACTCTTCAAGCTCCACATGGAGGCCTCCGACAATGTGCGCTTCCTGTCCACTGTGGAACGTCACTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-Dnahc10:NM_019536:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PU(10.2=58.5)
A:
NA
C2:
PF083857=DHC_N1=FE(13.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: