GgaINT0008913 @ galGal3
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4949086-4950192:-
Coord C1 exon
chr15:4950028-4950192
Coord A exon
chr15:4949317-4950027
Coord C2 exon
chr15:4949086-4949316
Length
711 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
TTACTCCACCTAACTTGTAGGGT
3' ss Score
7.56
Exon sequences
Seq C1 exon
CTGACAGAAGAGATTAAACTGGACATGCCAACTGTAAATCTAGATGGAGAAGTGAGTGTTCTCGCTACAGTTCCAGAAGTGGTTGAAGCTCTTGAAAGTTGTGCAATGACCTGGCAAAAATTAATATCCACAGTTCTAGAGGAACAACTGAAAAAGGTTCCACAG
Seq A exon
GTAATGGCTCCATTAAACCAAGCTTATTTACTCCCAGAATCTCTGTAAGAGTCTCTCTGAATGATTTGTGCGCTGTTTTAATGTCTTCGTGTTTGATTGTTGGAAAGACTATTTACTAATTGAAGAAAAGTAGAACAAAGGTGGTGAGGGCACGTATGACTCTGGGAAGCAGAAAATAAAGCAGTTCTCTGTAGATCCTATCCACCTAGGGAACTGTGGAAAGACAAGGCACTTCTGTTATTTGCATTCTTACTTCTAAAACCAGTGAGGTAGCCATGAAATATTAAAAAATACAATGATTAAAGTGCATATATACATATATATAAAACTGTATTTTCCCTTGAAAAGTCATCGTGCAAACAAAATAAAACCCAATTGTAAGGTTCTGAATCTGCAAACAGTTACACATATGAGTTATACAATTCAGTAGGAGATATTACATGTCTGTGAAGTTATTTGCGCATACATCTTTGCAAACATGGCATCTTCAAATCCAGCTCCACGGTATACTCCCCATGAGCAGTTCCTCTCTGCCTGTGTAAAACTTATGATTTCAGAGTTTATTCTTTCTTTTTTTCATGGTTGAATCACATCTGAGTTTTCTCAGTATACAGCATACTGAAAAAAAGAACAAATGTAGAGCTGTTTATAGGATCTCACCCTTGTGTAGTGGTAATTTAGAATTCTTATTTTACTCCACCTAACTTGTAG
Seq C2 exon
GGTAATGGTCCACTTGCAGAAATTGACCTCTGGCGTGTAAGAAATGCTGTTTTAAGTGACCTTAATGAACAGACAAAGCTTCCAGAAGTGGAAAAAGTCTTGACAATACTACAGGAAGCTGAGTCTGAGTGTGTCACAGATTTACATATAGTCTTCAGTGACCTCAGGGAACGCTGTGTGGAAGCTCTTGATAATGTTAGATTTCTTTCAACTCTGGAACACCATTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PU(5.2=54.5)
A:
NA
C2:
PF083857=DHC_N1=FE(13.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATTAAACTGGACATGCCA
R:
ATCAAGAGCTTCCACACAGCG
Band lengths:
349-1060
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]