HsaINT1011315 @ hg38
Intron Retention
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123783107-123784177:+
Coord C1 exon
chr12:123783107-123783264
Coord A exon
chr12:123783265-123783946
Coord C2 exon
chr12:123783947-123784177
Length
682 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTT
5' ss Score
6.3
3' ss Seq
GTGTTCATTTCACCTCTCAGGGT
3' ss Score
9.4
Exon sequences
Seq C1 exon
GTGAGATCAAGTTAGAAATGCCAATCATCAGTGTGGAGGGAGAGGTGTCTGACCTGGCAGCTGACCCGGAAACCGTTGACATCTTGGAGCAGTGTGTGATAAACTGGCTGAATCAGATATCCACAGCGGTTGAGGCCCAACTGAAGAAGACACCTCAG
Seq A exon
GTAGTTTGTGCAGGGCTTTCAGAGAGCCCCGATCCAGGTCATGCTTACCATGCTGGGAAAGAGCCCGGAGTCTGGGGTCTGCATCATCTGGCATCTTTTCTTACTGTTTTATGACTTCCTTAAGCCATCAAAATAAACACACCCAAAATATCATTTCTGGGCTTTCTGATGTTAATGTGCTACCAGGTTACTGCCTGGATTGATAAAGATAACACTTTGGATCAGTCAGGAAGCTTGGGCTGCCAAAAACAGGAAACCCAACTCAAGTCGATCAACTAAGAAAGCAAATTCCTTGGCTCACATAATGGAAAAGTCCAGAGGCAGGGTTGGCTTCAGGTCCAGTCTGATCAGGGCTCTGGCTATATTTCTGAATCTCTCAGTTCTAGACCCCTTTCTAGGGGCTGGAGAGCTTCATTCCTCAGGCTGGCTTCCTTGCAGCAGTTTCTGGCCTCACATTCTGTACACCTCAGTTGTCCGGAGAAAGGCAGAGTGTGTTTCTAGCATTCTCAGCTGGAGCCCTGAGATTCACTATGATTGGACCACCCAGGGTCAAGAGCCCACCCCTGAAGACCCTGAAGGATTGGAGCAGTTGGACAGAAAGAACGGATGCTGGAGAAACCACCATAAGTGTCTGCTCCACCCTAATAATGAGAGTTCTTTGTGTGTTCATTTCACCTCTCAG
Seq C2 exon
GGTAAAGGCCCTCTGGCTGAAATTGAATTCTGGAGGGAAAGAAATGCAACCTTAAGTGCGCTGCATGAACAAACAAAGCTTCCAATAGTCAGAAAAGTCTTGGATGTGATCAAGGAATCCGACTCCATGCTTGTGGCTAATCTGCAGCCAGTGTTCACCGAGTTATTCAAGTTCCACACGGAGGCCTCAGACAATGTGCGCTTTCTCTCCACCGTGGAGCGTTATTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653:ENST00000409039:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PU(10.2=58.5)
A:
NA
C2:
PF083857=DHC_N1=FE(25.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAATCATCAGTGTGGAGGG
R:
GGTGGAGAGAAAGCGCACATT
Band lengths:
352-1034
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains