DreINT0009096 @ danRer10
Intron Retention
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27713671-27714163:+
Coord C1 exon
chr5:27713671-27713829
Coord A exon
chr5:27713830-27713932
Coord C2 exon
chr5:27713933-27714163
Length
103 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTAT
5' ss Score
4.29
3' ss Seq
TTTTTCTTCCATTACCGAAGGGA
3' ss Score
6.35
Exon sequences
Seq C1 exon
GGTGAATTTAAATTGCACATGCCAGAAATAGATTTGGAGGGTGAAGTGGAGTTGTTCTTGTCAAATTCTGTGATGGTGGATAAACTTGAGCAGTGTGTGATGAATTGGCACACACAAATCACAATTGTCATTGAAGAGCAAAAAAGGAAGAAACCACAG
Seq A exon
GTTTATTAAATTTAAATGAAATGTTGTCATTAAATTATGATTTTCAAATTTGCAGATCAGTAATAAAACCTAAATCATCTGTTTTTTTCTTCCATTACCGAAG
Seq C2 exon
GGACCCGGTCCTTTGGCAGAAATTGAGTTCTGGCGTGAACGTGTTGCTGTCTTTAGTAGTTTGATTGAGCAGCTGAATCTGCAAGCAGTAAAGAAGATTCTAGAAGTGATGACCCGTGCCGATTCATTCATAATGCAGGAACTGGAAAAGACCACAGCCGAGCTTAGAAAATACTACGATGAGTCTGTCAGTAATGTGCAATTCCTCACCACAGTGGAGAGACACTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486:ENSDART00000135878:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PU(5.3=58.5)
A:
NA
C2:
PF083857=DHC_N1=FE(12.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGGTGAAGTGGAGTTGT
R:
GGCACGGGTCATCACTTCTAG
Band lengths:
245-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]