BtaINT0050230 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54040852-54042096:-
Coord C1 exon
chr17:54041951-54042096
Coord A exon
chr17:54041252-54041950
Coord C2 exon
chr17:54040852-54041251
Length
699 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAA
5' ss Score
5.07
3' ss Seq
ACACCCTTTTTCCTGTGCAGAAC
3' ss Score
10.96
Exon sequences
Seq C1 exon
GATGCTTTGTCTCAGGACTGTATCTAGAAGGCGCTGACTGGGACATAGAAAAAGGATGTCTTATCAAGAGCAAACCCAAGGTGCTGGTGGTTGACCTGCCCATCCTGAAGATCATCCCCATTGAAGCCCATCGCCTCAAGCTGCAG
Seq A exon
GTGAAATGCTGATGCCCACCCCAGTTCTCCTCTTCTGGTCTCCTCTGACTAGAGTTAGACACCAGGCGGTTTCCAGCAGTCTTGCTTTTTAGCACAGGAGCCCTTCACCTTTCAGGGCTGGGGGAAGCCCTTGAGCCCGTCCTCAGGAAATGCACTCCTGCGCATGAGTGTGTGCAGAGCCTTCCTCAGGGGGGCATGGGTTCAAGCTCGGATGCGGTGGTCCAGGCCTGCTTCAGGAGTGACTTCTCCCTTCTTGTGAAATTCTGTGGGCACTGCTTGGATCTGGAGTTACATTCGCTGTGGACAGCAGGTGCCTCCTGCCCTGCCGCCTACCCGCTTTTCATGGGTGTTTGCAGAGCCTGGGCGTGCCTCATGGGCTTGGTGGGAAGCCTTCTGGTTCCTTAGCTCTTTGATGAGCCTTCGCCCTCCCACCCACCCTCTGGGACTAGCGCTGCCTTCTGCAGGCTCAGCTGGTCAAGAATCCTCCTGCAATATGGGACACCTGGGTTTGATCCCTGGGTTGAGACAATCCCCTGGAGAAGGGAATGGCTACCCACTCCAGTATTCTGGCCTGGAAAATTCTATGGACTGTATGTATAGTCCACATATATAGTCCATGGGGTCATAAAGAGTCAGACACAACCACGCAGCTTTCAATTTCACTTTCGATTCTGCCCTCACACCCTTTTTCCTGTGCAG
Seq C2 exon
AACACCTTCCGGACGCCTGTCTACACCACCTCCACCAGAAGGAATGCCATGGGGGTCGGCTTGGTTTTTGAAGCCGATCTCTTTACCACGAAGCACATTTCTCACTGGGTCCTGCAAGGGGTGTGCCTCACCCTGAATTCTGATTAACCCTCTGGCTGAAGAAACAGCAATGGATTCTAAGTCTGTGGTCAGTGGTGGATATGCTGGAGTTAGGGAAGACTAGATCGTCTGCTGTCACTTCTTGGGACTGCTGGAGGAAGGAGGGGGATTGACACTGCTTTTTCCTTTCATTTGAAATCCATTTTCATCTTTTTCCATATAAGTTAACCTGAATGGTTTTTTCAAAAAAATTTTTTAAGGAGTCTATGTATTCAAAAAGTAAAATAAAAAAGAGCCTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523:ENSBTAT00000029664:78
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.7=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(6.3=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGAGCAAACCCAAGGTGC
R:
TTCCTCCAGCAGTCCCAAGAA
Band lengths:
342-1041
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development