HsaINT0049288 @ hg19
Intron Retention
Gene
ENSG00000197653 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:2941]
Coordinates
chr12:124419168-124420267:+
Coord C1 exon
chr12:124419168-124419313
Coord A exon
chr12:124419314-124419881
Coord C2 exon
chr12:124419882-124420267
Length
568 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
3' ss Seq
CACCTGCCTTTCCCTTGCAGAAT
3' ss Score
12.56
Exon sequences
Seq C1 exon
GATGCTTTGTCTCAGGACTGTACCTGGAAGGTGCTGACTGGGATATAGAAAAAGGATGTCTTATCAAGAGCAAACCCAAGGTGCTGGTTGTGGACCTGCCGATCCTGAAGATCATCCCCATTGAAGCCCATCGCCTCAAGCTGCAG
Seq A exon
GTGAAGGTCCCAGCCCCTCCTCTCTGACACCAGGGCCCTTCCTCTTCTGACTGTAGTTATGGCTGAGGTGGTTTCCAACAGTCCTACTTTTTAAAACAGGGGTGCCTAAGCTTTATGGGCTGGGGAGAGTCTTGGAGCCGTGATAAAAGCTACGGATAGCTGCTTCCTGGAAAAGGCGCGGCTGTATGTGTGTGTGGATGCCGGTCCTTCCAGAGGTGTCAGGCTCAAGCTGTGATCCTGTGGTCTAGACTAACCAAGGGGAGACTCCCTCCCTTCTTGCAAAATGCTGCAGACATTGCCTGAGTCATAAAGTGGTTCCCGCTGGTGTGGACAGCAGATGTCTTCTGCTCTGCCTGGGCCAGGACCCACTTTTAACCAGGGTGTCAGTGTGAAGCCAGGTCCCCGTGAAGCTGGCGGAGGGTGGCCCTGAGCAGCCCCAGCCTTGTGCGTGTTCTCAGGTGCAGTCTTGCACAGGGGCCCCTGCCTGTCAAGACTTACACTGCACCTCTGCCTTTATCCCTCTGCACCCTCTCTCCGTGGGGGCATCTCACCTGCCTTTCCCTTGCAG
Seq C2 exon
AATACTTTCCGGACCCCCGTCTACACCACCTCCATGAGAAGGAACGCCATGGGAGTCGGCTTGGTTTTTGAAGCTGATCTCTTTACCACGAGGCACATTTCTCACTGGGTGCTGCAAGGAGTATGCCTCACCCTGAATTCTGATTAACCTTTGGGTGAAGAAAACTGCTTAATGAATTCGGAGCCTGGGGTTGTCAGAGTGATCGGGTCTGCTGTCATTTCTTGGGGCCTCTCAAGAGGCAGGAGGGGGACTGACACTGATTTTTCATTTGAAATCAGCCACTTAAATCTCTTTCCATACAAATTAACCTGAATGGTTTTGTTTTTAATACTACTTTTTAAAAGGAATTTATATAATCAAAAAGTAAATATTGGAGAGTATTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-DNAH10:NM_207437:77
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.7=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(6.3=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGAGCAAACCCAAGGTGC
R:
AATCAGTGTCAGTCCCCCTCC
Band lengths:
345-913
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)