HsaINT0049288 @ hg38
Intron Retention
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123934621-123936206:+
Coord C1 exon
chr12:123934621-123934766
Coord A exon
chr12:123934767-123935334
Coord C2 exon
chr12:123935335-123936206
Length
568 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
3' ss Seq
CACCTGCCTTTCCCTTGCAGAAT
3' ss Score
12.56
Exon sequences
Seq C1 exon
GATGCTTTGTCTCAGGACTGTACCTGGAAGGTGCTGACTGGGATATAGAAAAAGGATGTCTTATCAAGAGCAAACCCAAGGTGCTGGTTGTGGACCTGCCGATCCTGAAGATCATCCCCATTGAAGCCCATCGCCTCAAGCTGCAG
Seq A exon
GTGAAGGTCCCAGCCCCTCCTCTCTGACACCAGGGCCCTTCCTCTTCTGACTGTAGTTATGGCTGAGGTGGTTTCCAACAGTCCTACTTTTTAAAACAGGGGTGCCTAAGCTTTATGGGCTGGGGAGAGTCTTGGAGCCGTGATAAAAGCTACGGATAGCTGCTTCCTGGAAAAGGCGCGGCTGTATGTGTGTGTGGATGCCGGTCCTTCCAGAGGTGTCAGGCTCAAGCTGTGATCCTGTGGTCTAGACTAACCAAGGGGAGACTCCCTCCCTTCTTGCAAAATGCTGCAGACATTGCCTGAGTCATAAAGTGGTTCCCGCTGGTGTGGACAGCAGATGTCTTCTGCTCTGCCTGGGCCAGGACCCACTTTTAACCAGGGTGTCAGTGTGAAGCCAGGTCCCCGTGAAGCTGGCGGAGGGTGGCCCTGAGCAGCCCCAGCCTTGTGCGTGTTCTCAGGTGCAGTCTTGCACAGGGGCCCCTGCCTGTCAAGACTTACACTGCACCTCTGCCTTTATCCCTCTGCACCCTCTCTCCGTGGGGGCATCTCACCTGCCTTTCCCTTGCAG
Seq C2 exon
AATACTTTCCGGACCCCCGTCTACACCACCTCCATGAGAAGGAACGCCATGGGAGTCGGCTTGGTTTTTGAAGCTGATCTCTTTACCACGAGGCACATTTCTCACTGGGTGCTGCAAGGAGTATGCCTCACCCTGAATTCTGATTAACCTTTGGGTGAAGAAAACTGCTTAATGAATTCGGAGCCTGGGGTTGTCAGAGTGATCGGGTCTGCTGTCATTTCTTGGGGCCTCTCAAGAGGCAGGAGGGGGACTGACACTGATTTTTCATTTGAAATCAGCCACTTAAATCTCTTTCCATACAAATTAACCTGAATGGTTTTGTTTTTAATACTACTTTTTAAAAGGAATTTATATAATCAAAAAGTAAATATTGGAGAGTATTTTAAGATGTGTGGAGTTTTCTTTTCCTTCTCAGAGAAAACACTTGATTAGGCAAAAGTGCCTGGCATACATAGCATTGGCACAAGTGAGAATCCTAATGTAATTTCCAAAGGTGTGTTTTCGATGATCCAGGTCTGTTTCAGCAGATGCTCCTTTTTGGCAAGAAGGGCTGATGATGTCGGGCACAGAGCAGAAGTGACCAGTCACCTGGAGCCACTTCTCCCCCTTCCAGAACTCTCTGGCCCTAGCTTCTTTGGCTCTGACCTGCTACGGCGACTGTGAAGTTGTTGAGCTTAGTGTTTAGTTCCTGCATGAGCTTCTACCCCCAGCCTGCCTGGGTCTGTGTGGGGTCAGGTAAGGACACAGAACCTCCAGGACCAGTGGTCACTGGGCACCCCTTCCCTCTGTGCACCATGAGGCTGGCCTGGAGCCCTGGCTGGCCACCTGGAGGTGAGGGGTGGCTTCACTCCATGAGGGAGGAGAGGGGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653:ENST00000409039:77
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.7=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(6.3=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGAGCAAACCCAAGGTGC
R:
AATCAGTGTCAGTCCCCCTCC
Band lengths:
345-913
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development