DreINT0009161 @ danRer10
Intron Retention
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27777168-27779182:+
Coord C1 exon
chr5:27777168-27777313
Coord A exon
chr5:27777314-27779035
Coord C2 exon
chr5:27779036-27779182
Length
1722 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGA
5' ss Score
3.01
3' ss Seq
TTTCTGTTTGTGTTTTTCAGAAC
3' ss Score
12.08
Exon sequences
Seq C1 exon
GATGTTTTGTATCAGGACTGTATCTGGAGGGTGCAGACTGGGACATTGACAACGGGTGTTTGGTGCGCAGCAAACCAAGAGTCCTGGTGTCTCAGCTACCCATCCTCAAAATCATCCCTATTGAAGCACGTCGCCTCAAACTACAG
Seq A exon
GCAAGACTTTCCTTATTAAAAACAAGAAACTACTGGCACCTCTGAGTTTAAATTGATATTTTGACCTTTACGGATTTTCTATTTTTTCCATTTATTTTTTTCATTCTAATGGAAAGAAAACATCCAAAATACACAAATTTTTTGTATAGAAATTTACCAATTTGTGTTTCAATTATACCTTTACCTACTAGACATTCTTTAAAGGCTGTTGCTAATAGAAGCATACAGAACGCTTTCTTTGCCATTCCAGATGACTTTATTAATAGGTTGTTTGAGTCATTGCAGAGATGCACGAATGAAGCAGGGATGAAGTCGTCCAAATGCATGGGACATAAATATTTATTCTTTTTCCACTGCACCATGACTTTATATTCTATACTGTACATTATTTCTGTTAAGTGACAAGACTTTTGTCTCAGCAAAGTCAGACTGTACTGTCCTAATTCAATAATTAAAAATCAAGGCATGATCATATTTTATTTCGGTTAAGTAAGCGTAATCTAGAGGCTTTTGCCTCTTACATAAGCCACTTCTGATACCAAATGATCAACTAGAAGTCAGGCTATTGTTTATTGTTTTTCAATCTTGGGTAGGCAACATGATATTTGTCAGTTAGTTTATATTCAGAAGGTTTTCAAAGAGAGATATGTTAATATATAATATGCCTAACTATACTATACTATACTATACTATACTATACTATACTAGTATGCACAACTTTTTTTCTAAAAAGAAAATTAAAAAAAATCCCCAAACCTTTGACTTTTGACTTAGATGTCCAAAAAATGAAAAAAAAAAAAGATTTCTGTATTCAAATTTATTCACATTTGATTAAATAATGCCCCATTTGCGTATTTATACAATTTTTGAAAACCTATAATACAAATAAAGGTTTCCAATTCCTAATTTAATCAAACAACTAGGGATCTATATGAATGTTTTGGTCACACTTTACAATACGGATTCATTAGGTAATGCATTTACTTACATGAACTAATTATGAACAATACTTATACAGCATTTAATTATCTTACTTTAACATTTACTGATACATTATTAAAGGCCCCATGAAGTGCTTCGAAATGTGCATTTTCTTCGATGTTTGAAGTTATCTCAACTGAAAAATGAAGAGAGGGATGTAGAGTAGCTCCTCCCCTTTTTAAAAAGTAGCCAGTTGCGCTTTGTGTTTATCACTGCTCTGCCATGTGCGAGTGGTTGAGCTCAAGTGCATCAAATGAAAAGCAATATAGAACGCGTCTTGAAGGGAGCGGGCATGTCAGATACTAGAGCATTTTATTGGTCAAGCTCAAGTATGAGGTGATGTGAAAAAAACGTTGATCCATTTAGACGGAAGCTTTACATGTTTATATCAGATTTATATCTTCTAATTTGTCACTATTTTGGAGCACACCAACATATAGAGGTCCTTAAAACTAACAGACAAACTAACGTTTAACATTTTTAATTTTATGAGACCTTTAAAATCCAAATTCATGCTTGTAATATTAGTTAATGAACCGCGAGTTAACCTGAACTAAAACTTTTTTCCATAGTTTGTTCATGTTAGTAAATGCATTTAATTGCATTAACTAATACAACCTTATTGTAAAGTGTTACTGATTTTTTTTCCCCATTGACCTGCAGTGTCTTGCCTCAAGAAGTTTACTTTTTGATGTCTCTGAATAAAAATATATAAGTAAAGTTTCTGTTTGTGTTTTTCAG
Seq C2 exon
AACACCCTGAGGACTCCAGTCTATACTACATCCATGAGAAGGAATGCCATGGGTGTTGGACTGGTGTTTGAGGCTGATCTTTACACCACCAAGCACATTTCTCACTGGGTGCTGGAGGGAGTGTGTTTATGCCTTAATTCTGACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486:ENSDART00000135878:69
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.7=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(6.3=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTATCAGGACTGTATCTGGAGGG
R:
TCAGTCAGAATTAAGGCATAAACACA
Band lengths:
286-2008
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]