GgaINT1011480 @ galGal4
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4855484-4856212:-
Coord C1 exon
chr15:4856067-4856212
Coord A exon
chr15:4855803-4856066
Coord C2 exon
chr15:4855484-4855802
Length
264 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
CTTTCCTCCACACCCTTTAGAAT
3' ss Score
8.39
Exon sequences
Seq C1 exon
GATGCTTTGTTTCTGGCCTGTCTCTGGAAGGGGCAGACTGGGACACAGAGAACAGCTGCCTAACAAAAAGCAAGCCCGGAGTGCTGGTGGTGGAGTTACCCATCCTGAAGATAATACCCATTGAAGCACACAGGCTCAAACTCCAG
Seq A exon
GTACCTTTCCACTGGGGACAGGGGTAGATTTGCTTATTATCTTCCTCCTATTGTTATATCTCAGTAGTTGCTAGTCCTTTTGCTCTTAGCATAAGCAGCACGAATACTGCCATTAGCATGTGAAATTTGCAGCATAAAGTTTCTCCTCACTCCTCAGAGTGAATTTCTGAAGACAAGCATCTCTTCTAGAGACCCCTCTTGCTTCCATTTTCACGCAGTACTTTGAGCACGACTCAGTGTCCTCCTTTCCTCCACACCCTTTAG
Seq C2 exon
AATACCCTCCGGACACCAGTGTACACCACCTCCCAGAGAAGGAACGCGATGGGTGTTGGCCTCGTTTTTGAAGCTGATCTTTATACCACAAAGCACATTTCCCACTGGGTGCTTCAAGGCGTTTGTCTCACTTTGAATGCAGACTGACAGGTTGGAGTTGGGCACTGCATTGTCCTCACAGCATCCGCCGCTTTAGAGAGGGAAAAAGAAAAGAAGAGGCAAAGACTGAGCCCCAAAGTGGGGGTAGTGTTCCCTCAGGTACAGCTGGCTTCCAGCAGTGCGCTACACCTGTGGGCTGCTGCCATCAATAAACACATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:77
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.7=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(6.3=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGTGGAGTTACCCATCCT
R:
GGGCTCAGTCTTTGCCTCTTC
Band lengths:
294-558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]