BtaINT0050761 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014063 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr23:12767135-12771806:+
Coord C1 exon
chr23:12767135-12767317
Coord A exon
chr23:12767318-12771700
Coord C2 exon
chr23:12771701-12771806
Length
4383 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
TTTGTTTTTTTTTATACCTGGAG
3' ss Score
-0.13
Exon sequences
Seq C1 exon
GTGAAAGTCGGCGATAAGGAATGTGATGTCATGGATACATTTAAACTTTATATTACGACAAAGTTACCAAACCCTGCCTTTACCCCTGAGATCAATGCTAAAACGTCAGTCATTGATTTTACTGTTACCATGAAAGGGCTTGAGAACCAGTTACTAAGGAGGGTAATTCTAACAGAGAAACAG
Seq A exon
GTAATGATTTCTCAAGGTAAAGAACTTCTGCTTATAATAAATTATAATAATGTTTTAATGTATTAGGAAATTGTTGAATGTATGGAAAGGAAAAAATGAAGCAAATCATATTTACCTTTGTTAGCATAAATATTTGTTTCTCAGGTCCTGTTGAGAAATCGTGCAACTAATCTCTTTTCTGATCCCTGAAAACACATGTGCACACACATGCCACTCTCTACTTCTGACTTTAAGGCTTTGGGTATATTGACTTTCGTATCTACAGCCCTATAGATGAGTAATCTTGAGTTTCACCTGAAAAATTCAATGAAATGATGATCCTGAAGAAAAAGAAATTGCTCTGGATGAGTATTATTAGTAGTTTTAACTGCTGCTGCTGCTAAGTCGCTTCAGTCATGTCCGACTCTATGTGACCCCATAGACGGCAGCCCACCAGGCTTCCCCATCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCTTTCTCTGATGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTCGTGTCCGACTCCTAGCTACTACACTGCAATAGTAATTGATATACTTGGCTATAATTGATACTATCACACTCTAATAACCTAATGATGTAGGGAGCCTTACTTTCATTTTAGTTAAATAAAACTTATACTGAAGCAGAGAAATTAAGTATAATTGAGAGTTCTGATAAAACAAAGAACAACGTAAAGCTGGAAAATTTTAAGGGCCTGATAAGCTAAGTTTTAAGATAAAGCTCAGAAAACATTAAATGTTATATATAAAATATAATTTTATATATTTTTATTGTATAAAATCTATTTTCATAAAATCTGAGAAAGTTTATATTTGCTTAAATATAACTAATTTTAAGGGCTTTCTAGGAGAAGGAAATGGCAACCCACTGCAGTGTTCTTGCCTGGAGAATCCCAGGGATGGGGGAGCCTGGTGGGCTGCCATCTATGGGGTCGCACAGAGTCGGACACAACTGAAGCGACTTAGCAGCAGCAGCAGCAGGTGGTGCTAGCACTAAAGAACCTGCCTGTCAATGCAGGAGACATAAGATCCCTGGGAGAAATGGCAACCCACTCCAGTATTCTTGTCTGGAGAATCCCATGGACACAGGAGCCTGGTGGGCTACGGTCCATGGGGTTGCAAAGAGTTGGACACGACTGAAAGCGACTTAGCACATAGCATATAGCACAACTAATTATAGTATTAAGGGTTCAAGGAGAAGGCCAGGTTAGAAATAGTAATGGGAGGGTGAGAAAAAGATTGGCAGAAGAAAGGAGGAAAAGAAGAGACATGAATAGATGGCAACAGATACAAAGGAAATATTCAAAAAGGGAAAGATACTGACACCAAAAAAATAGAGGGCTCAGTAAAATGAGAAGTAAAATCCCATCTGGTTAATAAGAAATGGCTGACTTGGGGCAAGCCCTTGAAAGACAGCCAGTGTAGTGGGGTGAAAGGGGCCCAGTCTCAGCTTCCCCTCTCATTAGCTGTGTGATCTTAGTTTCCAAAAAAACGGCCCAGGGCTTATGCAATCCAGAAAGGGAAGTCTCTCACTTCTAGAGTCTGGCAGAGAGCATAGGCCCCTCAGTTCACTGCCTCTGTCACCTCTTAAGGCCGCATGGTATCAACTATTGAAAATCAGTCCTTCCTTCTTGGTCTACCTGGTGCTGCTGATCTGTTTTGATGTTGCCTCATTGGTTCAGATCCCCAATGAAAGCTTCACTAACTTCTTAAGGCAGGCCATACCGCTGTCTAGGGTACACTCCTCATCCCCAGAGCACCCTAAACCCACTCCTCCGGGCCTTAGCTTCCTCTTCAAGAGAGGTGCTAAGGTATTCATACCAACCTTGCTGGGAAAAACACTTAGTCTGCGATGTTTGGAGGGTGTATTTTTTTTCCTACATAAATAATGCATTCTTAAAATTATACTTTGAAAATTTTTTTCAAACTTTCACAAAAGTTACAAGACTCATCTATGAACTCTCATGACATGATGTTTAACCTTCCTAACAATCTTGCTCTTATACCCCGTTTTCACAGATGAACAAATGGAGACCAGGGAGAATAAGGTCTTAACCATAAGAGTCCATGGACTTTCCACCCTGCCAAACCTCGTAGATAAGCTGTACAGGTCATGCTGTAAAACTCACAGGTGCCCACTGTGCCACATGCTTCTTTTTCCATATCACACTGAAAAGGAGGCTAACAGGATTTCATCTTGTCCACACATGCCTATACTGCCACCCAGGGGGTGACTGTTTTAATGCAGGCAATTCATTAATTATTCCCCTTGGGCTTCCCTTGTGGCTCAGATGATAAAGAATCTGCCTGCAATACCGGAGACCTGGGTTTGATCCCTGGGTTGGCAAGATCCCCGGGAGAAGGGAATGGCAACCCACTCTAGTATTCTTGCCTAAAAAATCCCATGGGTGAGGAGCCTGGTGGGCTACAGTCCATGGGGTCACAAAGTCAGACACAGCTGAGTGACTAACACTTCACTTCACCGCAAGTACAGCCATGATCTTATCACTAACCCATCAAATACTCCCAAACCACTAATACAATGGCAGTATACACTAGCATTGGAGTTAGGGGACAAGGGCATTAGGCCTGTCTCTGCTAGCAACTGTGCTCAGTTGCTTAGTCGTGTCTGACTCTTCGCTGCATTTTAAAAAATGAATGGGTAGGAGGAAGTATCCCTTGTGGTCTGGTGGTTAAGAATCCACCTGCCAGTGCAGAGGGTGTGGGTTCGATCACTGATCTGGGAAGATTCCCACATGCCAAGTGACGACTAAGCCCATGTACCACAAAAGCCCGTGCACTGCAACTACTGAGCCAGCACTCTGGAGCAACCGAAGCCTGCGTGTCCTAGAGCCCATGCTCTACAAGAGAAGCTGCTGGAATGAGAAGCCCGTACCCGCAACAAAGAGTAGCCCCTGCTTTCCACAACTAGAGAAAGCCCACGCACAGCAACAAAAACCCAGGGCAACCAAAAATAAACAAATCCATCTTTTAAAAAAAATGAATTTAGGGGGACACGTTCCTGCCCTCTAGATGCTCAGAATCTGGTTGCGATGCCAGCCATAGTAGATGTACAGATGACTGCCATGCTGTGGGTTTTCATTGACAAATTGATTTAGGAAGAATTTCTGGAAGTTTTTTGAGAAACTTTCTCAAATAAGTAGTTTAAAAACACATTTTAAATGCAGTTCTAAGTATACTGTGATTCCATGTAAGATCAAAAAAGAATGCTGTGAAGACTGCTTTTGAGACAATTTAATTTACTCTATATTTAGCATGAGTATTACAGTCATGTTACATTTTCTGAATTTGAAAATTGCACTGTGGCTGTATAAAAGAGTGTCCTGTTTCCCAGGAGATATGTTTCAGTTTTTAAAGGTAAAGGATGATGACACATGCACACAGTTCGGCAGCAATAATTATCACAGAGGAGAAATAATGGTAAAGCAAAATGGTGTTTGATGAATCTAGGTGAAGGGTATATGAGGGTTCATGGTACCAGTCTTGTAACTTTTCTGAAAGTTTGAAAAAATTTTTTCAAAGTATACTTTTAAGAATGCATCACTTATGTAGGAAAAAAATATACCCTCCAAACATCTAATTTAGCCATTCTGATAGAAGGGATGCAAAACAATGGAAAGTGGATGTATATTGGCAACTGACTATGTCAGGTCAAGTACCTGGTGTTCCTGTAGTCAGGTCCCAATTCAGAAGCTCCGATCACTTGAGTATCTATTCGTTTCTTGGTTTTAATGCCTCTTTGTTTCTGCCCTTTCTGGCTGCAAATAAAGTTAGTATTTCTCACTGAGGGCGGTATGTGGGAACAGGGCCAAGAGAATGGGACACTCTGATTTAAATAAATGTAGAGGTGGAAAAAGCCTGGGAAGAATTATTTTAGCAGAGTTATCCCATGTATGCCAGTGTACGTGCTATGGAAACTTAATGCTAGTGGGCATAGTTTTTTTTTAATGGTTAAGAGAAACCAAAATACAGATTTGACTAACGATAGTGTCATTTGACGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAGAATCCCATGGATGGAGGAGCCTGGTGGGCTGCAGTCCATGGGGTCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGATGATATTTTTTGTTTTGTTTTTTTTTATACCTG
Seq C2 exon
GAGTTAGAGTCTGAGAGGGTTAAACTTTTGGAGGATCTGACTTTTAATAAGCGGAAGATGAAAGAACTTGAAGATAACCTCCTCTACAAATTAAGTGCTACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014063:ENSBTAT00000018689:75
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(26.0=100)
A:
NA
C2:
PF127812=AAA_9=FE(15.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]