MmuINT0051183 @ mm9
Intron Retention
Gene
ENSMUSG00000033826 | Dnahc8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30931578-30937534:+
Coord C1 exon
chr17:30931578-30931760
Coord A exon
chr17:30931761-30937428
Coord C2 exon
chr17:30937429-30937534
Length
5668 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TGCTTGTGTCTTGGTAACAGGAG
3' ss Score
6.39
Exon sequences
Seq C1 exon
GTGAAAGTGGGTGACAAGGAATGTGACATCATGGACACGTTTAAACTTTACATCACCACGAAGTTACCAAACCCTGCCTTCACCCCTGAGATCAACGCCAAGACGTCCGTCATTGATTTCACTGTCACCATGAAGGGACTCGAGAACCAGTTACTCAGGAGAGTCATTCTCACAGAGAAACAG
Seq A exon
GTAAAAGCTCTAAGCCACAAGTAGTGAGTAAAATTAAAATGGATTAGGAGGGCCAGTGAGATGGCTCAGCAGCTCAAGGTGCTTGCTACCAAGCCTGGAGACCTGGATCTGGTCCCTGGGAGCACCATGGTGGAAGGAGGGATAACTCTTAGGCTATTGTATGGCTCCTCCAACAAACAAATGAATATATGAATGAATGTAAAAAATAAAATAGAATAGCATGTTGTAATAGCAAATTTGTGGAAAATATAGGCCAAAATCATACTTCTTGTTAGCATAAGGAGATAATTCTTCCTTAGTGATAATTTGTTAGGAAATTATATGATTCAGATATCCTCCATCCCCAGATACCACACATAAACACAGACACACACACATACACTCACACACACACATTCTTGCACACACACCTGCACATAGATTTGTACACATTTGCATGCACACACATGCACATACACACATTTTACATACACTTGTGCACAATCCATGCATTCACATATGCACTCACATACACATCTGTGCACACACACATATTTGCACACACATTGGCACACATACATTCATTCGCACATACACCTTACTTCATACTTCTGCCCTTATATATTTGGATGTATTGATTCAATACATTCCGATCCATAGTGCTGTGGATTGTCTGGAGACACCTGAGAAATTTAATAAAAACAACGATCCTAGAGAAAAAGGAAATCCCCCTGTACCTGCCCAGCCATTACTAACTGCTGGAATTTCAGATATTGCAGAGTAATAATGTCATGATATAAGGGACAATATTTCAAGCGGAAGTTCCATTGGAGGACACAAACCAGTTGGGTAAAACGAAGGACATTAGTGAATCTAAGAACAATAATTTAAAAGCTAGATATGAGACCAGAGTAACTTTTAGGATGTTCGGAAAACTGAATTTTATGCACAACACATATTTGCATATATTAACTGTATTTGCATAAAGCACAACCGAGTTTACACTTACCCTGATGTAACTCATTTTAGTATTCAAGGGAAGGGCAAGGTGAGGGGCAGTGAGAACAAAGAGGCATACAGTTAGGGAGGAGAGGTGAGAAAAAAATGGGCTAGATGGGCTCCAAGTGAGGAGAGGGATTCCAGAAGGCAGAGAGACGTGTTTCCAACTCTCCTTCATGAGCAAGATAACAAGGACATCCTTTCTGCTTACCAGAAGTGGCTCTTCCCAAGGCACCAACCATCAAACCCCCAGTTGTCTGCCTCGACTCCCTCTCAGGTTCACATAGAGTCTGTTGTTGCAAACAACTCCCCTGCAGTTGAACAGGTGCTGGTGGCCTATTTTGAAAGGATCTCACAGATGTAGCTCTCCCCCAAGGCTGTTCTACCCAAAGGTCTGTCTGGTGCTCCCACATCCCTCTTTTTAACTTTTGTTCCTCCTCAAATCGCCTGCTGGCACGACTGTGCCAGGCTTGCTGGAATGCACTCAAGACAGGCTTCACAGGCAGGCTGTCTCCCCTGACGGCCTCGCTACGGAACTTCCAGAGGCCAGAGAGACGGGGGTCTCACTCTGTCACAACACGTGCATTTTCCAGTTTGCCAGGTCTCCTGAAAGCCCCCCAGGTCGTGCTGTAAGACTTAGCAAAGGTCCACTGTATCATGATGCATGATTTTCCCTACTGTGTTAAAAAGGGCCGGAATGTGTACACACGAGCCTGTGTGAGCATGTGTGTACATATACATACATGTGAAGGCCAGAGACCTCAATCACCATGTCTCCCGTGGTTATTTTCTACATTATTCTTTAAAAGAATTACTTTTACTTATTTATTTTATATGAGTACACTGTCACTGTCTTCAGACACACCAGAGGAGGGCATCGGATCCCACTACAGATGGCTGTGAGTCATCATGTGGTTGCTGGGACTTGAACTCAGGACCCCTGGAAGAGCAGTCTGTCTCTGAATCTGGAGCTCACCAGTTAGGCTAGGCTGACCCGCTAGCAAGCCCCTGGATCCCTCCTGATTCTCTAGCCCTGCAGTTACAGGCACGCTCCACCATGCCCAGCTTTTTACACAGCTGCTGGGGAGTCAGGACCTGAGCCCTCATGGCTGCAGGGTGAATGCTGTACTGCCTCATCTACCTCTCCATCCCCAGAGGTGATCATTCTAATGGAAACCATTCTTTAAATGGTCTCCTGCAAGAGCGACCACACTTTTCACTACCCCGGCAAATCCCCCAGCCCTGTGAGCAGGAGAACAGGGGCACTAGCCTGGGTTTGAGGACAGTCTATCCTGTCTACCTCTGCCAGTAACTATCTCTGTGTTTTACTGGGATGCTACGCAGGGGGTTCATCTTCCCCAGAAATAAATAACTACCAAGGGATGTGAAGGAAAGTCAGCATGTTGTTGTGAGTCCTGCAGAGACTCAAAGTTGGTGCTCTTAAGAATTAAAATGAAAAGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGTTCTTTCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGTTCATAACCATCTGTAATGAGATCTGATGCCTTCTTCTGGTATGTCTGAAGTCAGCTACTGTGTATTCATATACATAATATAAATAAATAAATCTTTAAGAAAAGGAATTAAAACTACACAGGGCAGGAGCATGTTAGACACCAAGTTCTGGATGAAAATATTGTCCAGGCAGCCTGATTCAAGCCACAGTGGACACTTGATTCAGTGTGGGGCTATGGCTTTTGATCACCTCTTTGCTTCCAGGAGACTTTTCAAATTAGCAAGGTTTCCAAGGCAGCTTTTAGCCAGGGATGTTCTCAAGTTAGAGGCCTTGATTCACCTTGAAATACAACCCTAAATGCAAAATGTGCTTCTGCATATAGATGAGGAAAACGAAGGGGATTCGGCTTGGTTGACAGAGCCCTTGCCCACCATGCATAGACCCCACAAGTCCACTGTACCAACAGTGTGTGTGAGCACAGGCCTGTCCACTGTACCAGCAGTGTGGGTGAGCACAGGCCTGTCCACTGTAACAGCAGTGTGTGTGAGCACAGGCCTGTCCACTGTAGCAACAGTGTGTGTGAGCACAGGCCTGTCCACTGTAGCAACAGTGTGTGTGAGCACAGGCCTGTCCACTGTAGCAACAGTGTGTGTGAGCACAGGCCTGTCCACTGTAACAACAGTGTGTGTGAGCACAGGCCTGTCCACTGTACCAGCAGTGTGTGTGAGCACAGGCCTGTCCACTGTACCAGCAGTGTGGGTGAGCACAGGCCTGTCCACTGTACCAGCAGTGTGTGTGAGCACAGGCCTGTCCACTGTAGCAACAGTGTGTGTGAGCACAGGCCTGTCCACTGTAGCAACAGTGTGTGTGAGCACAGGCCTGTCCACTGTAGCAACAGTGTGTGTGAGCACAGGCCTGTCGACTGTACCAGCAGTGTGGGTGAGCACAGGCCTGTCCACTGTAACAACAGTGTGTGTGAGCACAGGCCTGTCCACTGTACCAGCAGTGTGTGTGAGCACAGGCCTGTCCACTGTAGCAACAGTGTGTGTGAGCACAGGCCTGTCCACTGTAACAACAGTGTGTGTGAGCACAGGCCTGTCCACTGTAACAACAGTGTGTGTGAGCACAGGCCTGTCCACTGTAACAACAGTGTGTGTGAGCACAGGCCTGTCCACTGTACCAGCAGTGTGGGTGAGCACAGGCCTGTCCACTCTACCAGCAGTGTGTGTGAGCACAGGCCTGTCCACTGTACCAGCAGTGTGTGTGAGCACAGGCCTGTCCACTGTAGCAACAGTGTGTGTGAGCACAGGCCTGTCCACTGTAGCAACAGTGTGTGTGAGCACAGGCCTGTCCACTGTAGCAACAGTGTGTGTGAGCACAGGCCTGTCCACTGTAACAACAGTGTGTGTGAGCACAGGCCTGTCCACTGTAACAACAGTGTGTGTGAGCACAGGCCTGTCCACTGTAACAACAGTGTGTGTGAGCACAGGCCTGTCCACTGTAGCAACAGTGTGTGTGAGCACAGGCCTGTCCACTGTACCAGCAGTGTGTGTGAGCACAGGCCTGTCCACTGTAACAACAGTGTGTGTGAGCACAGGCCTGTCCACTGTACCAGCAGTGTGTGTGAGCACAGGCCTGTCCACTGTAACAACAGTGTGTGTGAGCACAGGCCTGTCCACTGTAACAACAGTGTGTGTGAGCACAGGCCTGTCCACTGTAGCAACAGTGTGTGTGAGCACAGGCCTGTCCACTGTAGCAACAGTGTGTGTGAGCACAGGCAGGCCTGTAATCCCAGCACTAGGGAGGTTTGAGCAGGAAGATCAGGGGTTCAAGGTCATCCTCACCTTCATCGTGAGTCTGAGGCTAGCCTGGGCTACATAAGACACTGTGTCAAGAACAAAATAATAATACTAACAACAACAACAACACACACAGACAGACACACACAAAAATTGTTACAATTATTCTCATTTGAACTCTATCAATGTCCAGTTGCTAGAATGTCAGGTCAGGGATGTGGCTCACGGGTTAAATTGCTGGGAGAGTTCGGATGCACAGAGATGCAGGACTGGTACTGATGCCCACATGATGGGCAGCAAAGCCACCTGTGTCTGTGCTCTCTGGGTTTAATGAGAAACTCTGCTTTAGTGATTAAAGCGGACGATCCATTCAGGATGAGTCCAAACATCAACCTTGCACGCACACTCCCACACGTGTGAGCCCCACCGCACGCAGAGTCACATATATATGCTTACACGCCCAACCCCTTCACATATGTGAAAAAAGCGAATACGGAAGAAGAGATGAATATTATTGAGATGATTTTCCTTTAGACCCTACAAGAATGTTCCGTCAATGGCCAAACATCCTGGGCTTGAAGAGCGGGCCTGACTCCGCAGGGCAGCATCCTGGTTCTCAGGAGACTCACCACAGTGTTTAGGAGCAAACCAAACTTGGGTTCTCAGGATTGCACATCGGGCACTCTGCTGATTGGGCCATCTCCCAGGCCCAGAGCTATGAAACGTCAGAGCCGGCGGGCCTCACTTTATTGATTACCCAGAGAAACATAAATATAAACAGTTTTGACTTATATTTATTTTTATATATTTTGACTTTATATTTATATTTATGTTGGTGATGATTTCTTCCACCGTTCAAAAATTGACTTTGTTTAGACCGCTGAAGTTGTCCATAAAACACCAGTGAGCCCGATTTCCTGAAAGCATAGGTGACTCGGTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATCATGACTGAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCAGCTTACATTGCTGTTCCATTACCAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCCTTACTAGTTTGCTTCTCCTGGCTTGCTCAGCCTGCTCTCTTGTAGAACCCAGGACCACCTGCTCAGGGATGGCCCCACCCACAATAGGCCCTCCCATCCTTGATCACTAATTGAGAAAATGCCTTAGAGCTGGATCTCGTGGAGGCATTTCCACAAGGGAGGCTCCTTTCTCAGTGGTAACTCCAGCTGTGTCAGGTTGACACCCAAGACCAGCCAGTACACTCGGATCCCCATATCCTTTTGCTTGTGTCTTGGTAACAG
Seq C2 exon
GAGCTGGAGTCGGAGAGGGTGAAGCTCCTCGAGGACGTGACTTTCAATAAGCGGAAGATGAAGGAGCTGGAAGACAACCTGCTATATAAGCTGAGCGCCACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826-Dnahc8:NM_013811:76
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(26.0=100)
A:
NA
C2:
PF127812=AAA_9=FE(15.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: