GgaINT0087355 @ galGal4
Intron Retention
Gene
ENSGALG00000010116 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr3:28764329-28764959:-
Coord C1 exon
chr3:28764777-28764959
Coord A exon
chr3:28764435-28764776
Coord C2 exon
chr3:28764329-28764434
Length
342 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TTCTTGTTTTTTAATAATAGGAA
3' ss Score
7.61
Exon sequences
Seq C1 exon
GTGAAAGTTGGTGATAAGGAAGTTGATGTAATGAATACCTTCAGACTATACATTACTACAAAGCTACCCAATCCTGCTTTCACACCTGAAATTAATGCAAAAACATCAATTATTGATTTTACTGTGACAATGAAAGGACTTGAGAATCAGTTACTGAGAAGAGTAATTCTTACTGAAAAACAG
Seq A exon
GTAACTGTGAGGTGCACATAAACGATAGTGCTGCTTGATATTTATTTAACTGTTTTAGTATATAGGAAAAAGGAATGTTTAAGTGAAAAAAAAGAAAAAATTCTAAAATTTTGTTGAAATTCAATATAGAAATTTCTAAATAAAAAAAAAGCACAGTGAATTGGTAATTTTCTACAGATGGTTGTCAGTATGACATAATGTATGACAATAATGTATTTCATACAGCAGAAAAAAATAAAATGCACATTTCATGAACCTGTAAAATCAGCACTTGTATTTCAAGTATGGCTCATCTCTACAGTCCATCAAGTGTCATGCCATTTTCTTGTTTTTTAATAATAG
Seq C2 exon
GAACTGGAGGCAGAACGAATTAAACTCATGGAAGACGTAACTTTTAATAAAAGGAAGATGAAAGAACTGGAAGACAATCTTCTATACAAACTAAGTGCAACTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116:ENSGALT00000038200:54
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(26.0=100)
A:
NA
C2:
PF127812=AAA_9=FE(15.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAAGTTGGTGATAAGGAAGTTGA
R:
AGATTGTCTTCCAGTTCTTTCATCT
Band lengths:
263-605
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]