BtaINT0050821 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31120670-31127633:+
Coord C1 exon
chr19:31120670-31120912
Coord A exon
chr19:31120913-31127471
Coord C2 exon
chr19:31127472-31127633
Length
6559 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GCTGTTTATTCTCCTTACAGGGT
3' ss Score
10
Exon sequences
Seq C1 exon
CAGCGTCACTTCAGTGTGCTCACCCTCTCCTTCCCGGGAGCAGACGCCCTGTCCTCCATCTACAGCGCCATCCTGACTCAGCACCTCAAGCTGGGGAGCTTCCCGGCAGCGCTGCACAAGAGTGTCCCCCAGCTGCTCCATCTGGCCCTCACCTTCCACCAGAAAATCGCCACCACGTTCCTTCCCACAGCGATCAAATTCCACTACATCTTCAACCTCAGGGACTTCGCCAACATTTTCCAG
Seq A exon
GTGAGTCCGACCTCTCCGAGACACCTTTGGAGGCTTGACAATGACCCTGTTCCCTCCATCCTTGGCCAAACTCTTTGATGAAGGCAGGGTTCTTATGGGGTGATGAACATATAAGTAAACAGAGTACCGTGGGATCTGTGTGGGTCTATTCAAGAGAACAGAGTTCCGGGGCTTCCCTGGTGACTCAGTGGTAAAGAAGCCACCTACCAATGCAGGAGACACATCGATCCCTGGTCTGGGAAGATCCCACATGCCTCAGAGCAGCTAAGCCCATGCACCACAACTGTTGAGCCCAGGTGCCACAGCTACTGAAGGCTGAGTGCCCTACAGCCTGTGCTCCAAAGCCCAAGCACCTCTACTAGAGAGTAACCTCTACTCTCTGCAACTAAAGAAAAAGCCCTTGTAGTGACCAACACCCAGCACAGCCAAAAAAATTTTAAAATATAGAATTCTATTAGTCGATTGAGTTACTTCTCAGTAAGCCGGATGCATTTTTTGAGTTGGTTCCTTCAAGCTGAATGTGGCTCAGCATTTCAAAGATAATGTTATGTAATGATTTCAGCCTAGGAAAAGAGAGTGGCACGGAAAAAAGATAAAAATATTTTGCACGCCCTGTTGGTCCACTCATCTTTCTTGACTTGCAAGAGAACGTCCCCCACACCATGCAGGAGGGCTCTGCCTCCTATAGAAGCCATGTGGTGCTACTCCTAAGACACCATCCTCCAGCCTCTGGGATGCCTCAGTCCTAGAAACTCTGGCTTATTTCCCAGGTCAAAACCATTTCAAAATAGTGATGCTCTTCCAACTAGGGATGGCCTGTGTCTGCCTGGTGCTTCCAATCGCTCGGCTCCTCACTATCAAAACCTCCAGAGGGCAGTGCAGCAAACCCGGCCCCTTCTTCCCCTTGCTCAGGTAACCCGTCCTCACATCATGGGTCCATAACCCTCCCATCCTGGAGGAGAATCTGCAGAAACTACTCAGAGGGACCCCTCTCCAGGACAGCTCTGAGCCATTTTTGAGGGAAAGTGCCTTTTATACCAAGCAGAGGCCACACCTGTAGGGAAATGTCAACTTGACCAGGGAGCAAGGCTTGACCCTCCACGGGGAGCACATTGATAATTACCCAGGGTGAAGAGCCGACTCATTGGAAAAGACCCTGATGCTGGAAAGGACTGAAGGCAAAAGGAGCAGTGAGTGGCAGAGGATAAGATGGTCAGATAGCATCACCAACTCAATGGACATGAATTTGAGCAAACTCCAGGAGACAGTGGAGGACAGGAGAGCCTGGTGGGCTATAGTCTACGAGGTTGCAAAGAGATGGACGTGACTTAGTGACTGAGCAACAGCAACACTCAGGGCACTACCTGTGCAGGTAGGACTCTGGGAAACCTCAGACTAGCAAAAGTCCAGGCACTGAGGCCATAGGGCTTGCGGGTTCCGTGGTCGTAAGGAGCAGAAAGCCACTGAACATTAGTTCAGTGATCTGAGAGCAGCGTTCCCAAAAGGCTCACCCAGAGGGTGGACCACTGAGCCCCACAGCCAGGCCAAGTCTCTGAGAGCACGTGTGACCTGACCCAGGATGGCGCTCCTGGGTCAGGTGCCTCCAAACATTCACTTATTAACTTATAAATGAGGAAACAGACCCACAGAGCTTACACTGATTTGCCTAAGAGCACACAGCCAGCCAGGGAAGGAACTGGACTAGAACCTAGGTCTTCAGGTCCCCCTTCCAATATGCCATTCTGTCCTCATCCATCCTTTTGATGAAACAGCCTAAGACAGTTAAGGCAACAAGTAGGACCCAGCCCCGTGGCCCTCAGACCTGGACAGTGGCAATGTCTGTGCATCTCCACCCTCACCTCCCATTTATCAAGTATTCATTGAGAAAGACTTTTAAAATTTTTATTTATGTATGTATTTATTTTTGGCTGCTCTGGGTCTTCATGGCTGCACTCGGGCTTCCTCTAGTGGTGGCAAGCGGGGGCTACTCTCTGGTTGCGGTTCACGGGCTTCTTGTTGCGGTGGCTTCTCTTGTTGCTGAGCACAGGCTCTGAGCACAGGCTCAGTTGTTGTGGTGCACAGGCTTAGTTGCCCCATAGCACAGGGGGTCTTCCTGGACCAAGGATTGAACTTGTGTCTTCTGCTTTGGCAGGTGGATTCTTAACCACTGGACTACCAGGGAAGGCACTTTTTTATTTTTTAATCACACCAGCCATTTCTTAAATCTCACTGGAGTGGGATGAGACACAGGTGTCACCGTCTGCATTTTCCAAATGAACAAAAAGGAGTTAAGTCGTTAGATCAAATTCCCACTGCTCATAGTGGCAGAATGAAAGGGAAAAGAGGCATCAGGTCTCCCTCATACGATGCCCTGAGCCGGCTCCTGCCTGGACAGCAGCTTGTCACCTGTGCAACCTGAAATTCATACTCACAACAGCCCTTTGGGATACACATTATTATCCCAATTTAACAGAGGCTGGGAGACGTTGCCAGCTCATAGATGACAGCGTGAATGCTCGGGGAGGTAGAAGAGTACGCACGGTGTCGGTGGAATAACAAGTAGGTGGGAGCAGGCCTTGTAGGTGTCACCAAGCCACAAGATCGGGGAGGGAACTTTGAGATCAGAGAGGATCTTTGTAAAAGGTCCAGCTTCAGTCTGTAATAAAGCTGGCATTTATTGAGCCAGTCCTATGCCCTCTGCATCTGTTAGCTAATGATTTAATCCTCAAGACAACCATTTCAGGTACAACACTGATCACTTCCAATTTGGAAATGACAAAACTGTGTCACAGACAAGTCAGTAGCTCGAGTATGTTCGCATAACTGCCAAGCAGAAGCCTCGTACCCCAGATGAGTGGGGAGGTCAGCTCTCTTGTGTGGGGATTCAGGCTGCCAAGGTGTCCTGAGGAAGGAGGGTCCCAGTCCAGCCTGTGTTAGCTCCTCCCTAGTCAGGGAGGAACTAGGAGGAGAGGTATGGTGTGGGGCTAAGTCTGGTTCTTTTCCAGACTCAGCCAGCCTGAGTAGCAACCCCCGGGCTCTGTGTCCCAGCCCGACCTCTGCAGCCTGCCAGCTGTCAGCTCCCAGCCCCAAATGTGGGAAGTGCACCCCCACTGGAGAACCTGCCTCTGTCCATCGACACAGCCCCTCACCCTCCTCCTCCAGAACAGAGTTTTGAGCCCACAGCTTGGCTACAGCCTCCCCCTCCCTCCCCTTTCCCAGCCTGCTTGCCTAAAGGCCTGACAGGAGAGCTGTAAGGAGGGTTGAATGCCCGCAAGGAGACAGGTGCTGTCTGGAGAACACGCCGTTTTCCTCCATCCAGCTTGATCCAAGCTTCCATCATTCAGCCCTTCTCTGCGCTTCACTCACTCTGTCCAGGATCCGGACATCAGGACAGAACTTGATCGTGCTCTGAGCAGAAATCATTAAGCATTCCCATCTCAGTGCTACACAAAACTGTCTGAGTTGGTGCAAACTTTGCCCTTGACACACTCTCATCGACTCAGCCCTTAATTGTCAGTCAGCCTGAGCATCTGGCTGTAATGGGGCTTGTAAACTTCAGCTGATGGCTCTCCTCGCTCCCAGGGTCAGCACTGGTGGTGGGGCTCCTTCTCTGCTGTCAACACCTCACACAGGGCTGGTACCCAGGAAATCCAGGAAGCAGGCAGGGGTCAAACGGACCCACTGAGATTTCTGTCTTTCTCTAAAATAAACTTTTTTAAAAGTCTCACATCCAAGCCAAAAAGCGCCGAAGTCATGAACACACATCTCAGTTAATTGTCACAAAATCATCACAGCTACATAACCATAACTCAAGTCAAGAACTACTTTCCCAATAAATACATTTTTTAAAAAAGAAGTACATTGCCAGCATCCCTGAAACCCCTTGTTTTTCTTTCTTCTGTTCACTCTAAAAAAAAAATGAAGCTTTTCTTTTCATTGTACTTCCCTATTTTTTTGGCTACATTGGGTCTTTGTTGCTGCATGCAGGCTTTCTCTAGTTGAAGTGCCGCGACTTCCCATTGTGGTGGCTTCTCTTGTTGTGGTTCGTGAGCTCCAAGTTGCACGGGCTTCAGTAGTTGTGGCTCCTGAACTCTAGAGCATGGGGTCTGTAGTTGCGGCAAACCAGCTTAGTTGACCCGTGGCATGTGGGATCATCCCAGACCAGAGACAGAACCTGTGACTCCTGCTTTGGCAGATGGATTCTTAACCACTGGGCCACCAGGGAAGTCCTCCACTCACTCCTTCTTCTCCTCTCAGAGCTAAAGTACTGTCTGGACTTCTAGCCCCATACGTTATTTCAGCCTATTTGGGGACTTTATATGCAAATTGTATGGAAAATACGCTTGTGTACTTTTGTTCAATATTATGTTTGCACCTATATACACAATCATGCCATTGGTAAAAATGAATCATAGTAACAATTCCTTTCTTTCTGACCCTTAAGTCTTCCCATTGCTTGTTCTTACCTGCTGCCTCAAGGAAGAGACATAGTGAGAGTGGCCTTGCACAGCATTCCTAATTTTAAGGGCAAGTGTTTACAATAGTTGGCTGTTAAGTGTGATGCTTACTATAGATTTTCGTGGATGCTCTTTACCAGTTTAAGAAAATTTCTTTCCGTTTATAGTTTACTAAGAGTTTTTTTTTTATCATGAATATATGTTGAAACTTAAATGATTTTTCTATATCTGTTGAAATCACTGTATCTATCTTTTTCTCTTTTTTTTGTGGAAATGGGATAAATTACATTGATTATTTTTTATTAATCAACCCAACTGAGTTGTTAACATGCTGAACTTACTTTATTTTCTGGATTCCATTCATTATTTTTTTCTCTATAATGTTTGCACCTATATTAATATGATTTTCTTATCATTTTTCTTTCTTCCAGTGTTCTAAGGTTATGAAGTCCTCATAAAATGCATTGGGAACCGTTTCCTCTATTTCTACTCTCAGGAAGATTTTTTAAGACACTGTATTGTACCTTCATTAAATGTCAGAAGAATTTAGTGATGAAACCATCTGGAGTTTTTTTGTGAAAGATTTTCCAGTATAAATTCCATTTTTTAAATACGTATTAGGCAATTCACATTTTCTCCTTCTTTTTGCATCAGTTGTGGTCAGATGTCAGTGTCATCAGCTTCTAATTTATTAGCATAAAATTGTTTACAGTATCCTGTTGTTATCTTTTAAGTATCTGTTTTGTCTGACATGTGCTCTCTTTTTTTGTTCTGGCTATTGATTATGTGTACCTTCTCTGTTTTTCTCTTTTTATCTTCAATCAGCCCTGCTAGAGACTAGGGCTAATTGTGCTAGTCTTTTCCAAAGAAACTGAAAAAGAGACGTATGTCAATATTATGTGTTTGAATTTATTGGTTATCTCTATTTGATACATTTTTGTATACAAATTTATTAAAATTTGCTCTTTTCTTTATAATCTCTTTCTTCCTACTTACTCTAGGATCGAGATGAGTTTGTTCTTGTTCTTCTATCTTCTTGACATGGCTACTTAGATCATTAATTGTCAGCCTTTCACCTCTTGTTATGACCCGATCTTCATGCCATGCAGGTGAATCTGAGCATCATTCTGTCTGTAGCGAAAGTGTTAGTTGCTCAGTTGTGTCTTGACTCTGTGACCCCATGGACTGTAGTCCACCAGGCTCCTCTGTCCATGCATTTCTTCAGGCAAGAATACTGGAGTGGGTAGCCATTCCCTTCTCCAGGGGAGTCTTCCCAACCCAGGGATCGAACCCAAGTTTCCCTCGTTGCAGGCAGATTCTTTATTATCTGAGCCACCGGGGAAGCCCATTCTGTCTGTAATGACGTACAATTAAAGGACTCCTTTTCTTGTAAGATAAGACAGAAGTCAGTGAGGGCAAAGAAGGCATTGATGAGCTTTAAGTTATAGGATTTGAAATTGTCAAGAGGCTCTGACCTCAGTGGTGTCCATTTTTCCATAAAGGAGGTTGGAGCACTGGCTAATAGTAACAGGGAAGTGATGGACATTTGAAAAGAATAGTAAATATTTAGAATGATCCCTGAGGTGTATAGGAAGGAGAACTTACTAGAGGTGAATAACTAGATTGCTGACCTGTAAAAGTTAGCTATGTTCCTTCCAGCCCTCTGTTGTCCTTCTGATTTGAATTAACAGTCATCACCCAGATTAGCTTTCAAAATGGCACTTGTAGAGTTGAAATACAGCCAAGAAGCCACCTCACCCATTTCTGTGGTGATTTGGAAAGTAGTGGTTGAAATTCCAGGATCTCAGGTCAGGCAGACCTGGCTTCAAAGCTGTGTGGTTTTGAACTAAGGCCACTTATTACCCTATACTGTAGAGCACGCTTGCTTTCTTTCTGAATCTCACCCTTCACCTTATGCTGAATAACTATTGTAAAAATTACTTTGTAGGTTCATCACTGTGGTTAAGTGAGCTTTGTCTGGCAGAACATCTAGTTCAGTGCCTGTTGCATAACTGGCTTCCATCAATAGTAACTGCTGAAATTTTAAGTTGCTATTTATGTTATTATTATTTTTTTTTTTTTGCTGTTTATTCTCCTTACAG
Seq C2 exon
GGTATTCTCTTCTCCTCCGTGGAATGTGTCAGGTCCTCACAGGACCTAGTAAATCTCTATCTGCACGAATCGAATCGGGTTTATCGGGATAAGATGGTGGAAGAGAAGGACCTTGATCTTTTTGATAAGATCCAGGTAGACGTGGTCAAGAAAATTTTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509:ENSBTAT00000006131:53
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(29.2=100)
A:
NA
C2:
PF127752=AAA_7=PD(8.0=40.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development