BtaINT0050826 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31149219-31150526:+
Coord C1 exon
chr19:31149219-31149361
Coord A exon
chr19:31149362-31150364
Coord C2 exon
chr19:31150365-31150526
Length
1003 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGA
5' ss Score
9.78
3' ss Seq
CCATCTTTCTGCCTTCTCAGGTG
3' ss Score
10.66
Exon sequences
Seq C1 exon
GAGAGATCCCAGATCTCTACTCTGATGATGAGGTTGAAAACATCATAAGCAACGTGAGAAATGAGGTCAAGAGCCAAGGTCTGGCTGACAATAGAGAAAATTGCTGGAAGTTTTTCATAGAGCGAGTCCGACGGCAGCTGAAG
Seq A exon
GTACGAGGGTCTGCTGCTCAGGGTACAGAGGACAAGAGATGACTCCCAGGAGCCTCTGTGGACATGTTGGACACAGCAGTCCTTATTGGCCACCTTGGGAGTTGGGGGGACGGAGATGCAGTTCCCTCTGATCCCAAGCACCTGTGTGAGGATGCCCTTCTCACCTGCTGCTTCCCAGCATTCTTTTTTGCTAAATAATTTTAGATTGGAGTGTAATTGCTTTCCAATGTTAGTTCCTGCTGTACAATGAAGTGAACCAACTGTATGTATACATATACCTCTCCCTTCTTGAGCGTCCCTCCCACTCCACCCCCCATCGCAGCCCTTGGGCATCACAGAGCACAGAGCTGAGCTCCCTGTGCTAGACAGCAGCTTCCCCCAGCTCTCCGTTTTATGCATGGTGTGGATATGTATCAGTGCTACTCTCCCGTTCTGTCGCCTCCTCTCCTTCCCCTGCTGGCTCCATGTGTCCATTCTCTATGTCTGCATCTCTCTTCCTGCCCAGCACACAGGCTCCTCAGTACCATTTTTTTAGATTCCACATATATGCTTTAATACACAATATTTGTTTTTCTCTTTCTGACTTACTTCACTCTGAATGACAGACTCTAGTAGGTCCACCCACATCACTATAAATGACTCAATTTCCTTTTTTATGGCTGAGCAACCTCCCATTGTATATGTGTACCGCATCTTCTTTATCCATTCATCTGTTGATGGATGTCTAGATTGCTTCCATTCCTGGTTATTATAAATATGGCTTCAGTGAATACTGGAGTGCATGTGTCTTTTTCAATTACAGTTTGCTCAGGTTATGTACCCAGGAATGGGTATTGCTGAGTCCCAATATTCCTAATCCCTTGGCTAGAAAGGCTGGCTGAGAGTTTACAGATATTGTCTCTGTTGATATGGCTCCTAATGTCCTGGGAAATAAACAATCCAAGGCTGTGTGGATCTCTCTCTAAGTACCTTCTGGGTTCTCCCCATCTTTCTGCCTTCTCAG
Seq C2 exon
GTGACTCTTTGCTTCTCCCCGGTGGGGCCCAACCTGAGGGTCCGCAGCAGGAAGTTCCCCGCCATCGTGAACTGCACGGCCATTGTCTGGTTCCACGAGTGGCCAAAACAGGCCCTGGAGTCTGTCAGCCTCCGCTTCCTGCAGAACACGGAAGGCGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509:ENSBTAT00000006131:58
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(17.5=100)
A:
NA
C2:
PF127802=AAA_8=FE(19.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCCCAGATCTCTACTCTGATGA
R:
CCTTCCGTGTTCTGCAGGAAG
Band lengths:
295-1298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development