RnoINT0049273 @ rn6
Intron Retention
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52466290-52466992:-
Coord C1 exon
chr10:52466850-52466992
Coord A exon
chr10:52466452-52466849
Coord C2 exon
chr10:52466290-52466451
Length
398 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
CTCTCCTTCCGATGTCTCAGGTG
3' ss Score
8.57
Exon sequences
Seq C1 exon
GTGAGATCCCAGATCTCTACTCTGAGGAGGAGGAGGAGAACATCATAAACAATGTCAGGAATGAGGTCAAAAGCCAGGGACTCATTGACAGCAGAGAGAACTGCTGGAAGTTCTTCATAGAGAGAGTCCGGAGACAACTTAAG
Seq A exon
GTATGGAAAGACTAACTGTGGGGCATGGGCACCACCAGAGGTGGCTACCGGATGTGATAAATTAGACACTGCCCCTCTGGACTGTGTCAGGAGGACATAGTAAAGATACAATGATCTTTTGGCTGACCAGTACTGCCAGTCCACTGTTTTCCTCTACTTTATGAACAGGACCATCTTGTGCACAATGTGGTCCCAGCATTATTGAGCCCTTTGCTAGAAAGATAGGTTGACAGGGGAAGATTGTGACCCTCTTCCTGTTCGGCGTGCTTTTCAATTTTCTAGGAGATTAATAACCCAAACTTCTGCCTGTTTCTCTGTGGGCTTCTCTGATACTTCCTTGGTCCTCCCTCCTCTTCTGATGTCGCCTTTCTGTCCTCCCTCTCCTTCCGATGTCTCAG
Seq C2 exon
GTGACTCTCTGTTTCTCCCCTGTGGGGAACAAGCTGAGAATTCGAAGCAGGAAGTTCCCAGCCATTGTGAACTGTACTGCTATCAACTGGTTCCACGAGTGGCCTCAGGAGGCACTGGAGTCTGTGAGCCTCCGTTTCTTGCAGAATACAAAGAACATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171:ENSRNOT00000005583:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(17.5=100)
A:
NA
C2:
PF127802=AAA_8=FE(19.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCCCAGATCTCTACTCTGAGG
R:
CTCAATGTTCTTTGTATTCTGCAAGA
Band lengths:
302-700
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]