HsaINT0050083 @ hg38
Intron Retention
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11821920-11822599:+
Coord C1 exon
chr17:11821920-11822062
Coord A exon
chr17:11822063-11822437
Coord C2 exon
chr17:11822438-11822599
Length
375 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
CCACCCTTCTGACTTCTCAGGTG
3' ss Score
9.62
Exon sequences
Seq C1 exon
GGGAGATCCCAGATCTCTACTCTGATGATGAAGTTGAAAACATCATAAGCAATGTGAGGAATGAAGTCAAGAGCCAGGGTCTGGTTGACAACAGAGAGAACTGTTGGAAGTTCTTTATAGATCGGATCCGGCGACAGCTGAAG
Seq A exon
GTAAAGAGCATTTACTGACAGGGGCAGGCAGAGACCCGAGATGATTCATGGGAGCTTCCACTGATATTTCGGGCACAACTGTCCTTATTGATTGTCTAGAGTAGGTGGTGAGTGTGCGGCACCCTTCTCAGCCTGAGCACAGTTGCCAGGACACCCTTCTCATCTGCTTTAAGGGCAGCAGCATCCCTTGTGGATCACGCAGTCCCAGCGTTTTTGATCTCTTGGCTGGTGAGGCTGGCTAGCATTTACAGATATTATCTCTGTTGGATGTGCTTCCCAATCTTCTGGGAGCTAGAGAACCCAAGGCCATATCTGCCTCTCCGTGAGTATTTCTCTGATGCCTTCCTGGTTCTCCCCACCCTTCTGACTTCTCAG
Seq C2 exon
GTGACTCTCTGTTTCTCCCCTGTGGGAAACAAGCTAAGAGTCCGCAGCAGGAAGTTCCCAGCCATTGTGAACTGCACAGCCATCCACTGGTTCCACGAGTGGCCTCAGCAAGCATTGGAGTCTGTCAGCCTCCGCTTCTTGCAGAACACAGAGGGCATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174:ENST00000262442:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(17.5=100)
A:
NA
C2:
PF127802=AAA_8=FE(19.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCCCAGATCTCTACTCTGATGA
R:
CTCAATGCCCTCTGTGTTCTGC
Band lengths:
302-677
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development