MmuINT0051242 @ mm9
Intron Retention
Gene
ENSMUSG00000056752 | Dnahc9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65768707-65769285:-
Coord C1 exon
chr11:65769143-65769285
Coord A exon
chr11:65768869-65769142
Coord C2 exon
chr11:65768707-65768868
Length
274 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
CTCCACTTCCAATATCTCAGGTG
3' ss Score
6.01
Exon sequences
Seq C1 exon
GTGAGATCCCAGATCTCTACTCTGATGAGGAAGAGGAGAACATCATAAACAATGTGAGAAATGAGGTCAAAAGCCAGGGACTCATGGACAGCAGGGAGAACTGCTGGAAATTCTTCATAGAGAGAGTCCAGCGACAACTTAAG
Seq A exon
GTACAGAAAGACTGACTGTTGGTCATGGACACTGCCAGAGGTGGCTACACGATGTGATAAATTGGACACTGCTCCTCTGGACTGTGTCAAGATGATGTGGTGATGATACAATGATCTTTTGGCTGAGCAGCACTGACAGCATACAGTTTATGAACAGGTCTTATTGATATGGCTATAAATATGGGTTGGCATGGGGAAAGTCTAACCCTGTTCAGCATGTCCCTCCCCTTCTGATATCAACTTTTTGGTCCTCTCTCCACTTCCAATATCTCAG
Seq C2 exon
GTGACTCTCTGTTTCTCCCCTGTGGGGAACAAGCTGAGAATTCGAAGCAGGAAGTTCCCAGCCATTGTGAACTGTACTGCTATCAACTGGTTCCATGAGTGGCCTCAGGAGGCCCTAGAGTCTGTGAGCCTCCGATTCTTGCAGAATACAAAGAACATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-Dnahc9:NM_001099633:46
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(17.5=100)
A:
NA
C2:
PF127802=AAA_8=FE(19.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGATCTCTACTCTGATGAGGA
R:
TGTTCTTTGTATTCTGCAAGAATCGG
Band lengths:
293-567
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: