GgaINT0127377 @ galGal4
Intron Retention
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1111191-1114360:+
Coord C1 exon
chr18:1111191-1111333
Coord A exon
chr18:1111334-1114198
Coord C2 exon
chr18:1114199-1114360
Length
2865 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CTCTCCTTGGGGCCCCTCAGGTT
3' ss Score
6.9
Exon sequences
Seq C1 exon
GTGAAATCCCTGATCTCTTCCCGGATGATGAAGTTGAAAACATCATCAACAGCGTGAGGAATGAAGTCAAAGGCCAGGGCCTGGTGGACTCCAGAGAGACTTGCTGGAAGTTCTTCATAGAGCGTGTTCGACGACAGCTGAAG
Seq A exon
GTGAGACAGTGGCTGTGGGAGCTTGGGGCCTCCCCATCTACGTCAGTGCAGTTCTGAGTGCTGGAAATCCTTTGGGCTACATTGTAGGGACATCAGCCTGCAGCCTGAGAGGCTTTTTTTGCCTGTTCATGATGTGAACCATGATTCTCTCAGCAAGTACCGAAGCATAAAAATCGCTGTCTGTAGTCATCACTTTTTGGGCGTTAGACAGCACTATGGGAGTTGTATGTTGTCACTTTCAAGAGCTGAGCAGGACCAGCCTTTCCATTTTCAAAGCAGTGCACCAGGGGTTTAGCTGGGGTGCATCAGGACTAAGTCTTACTGCTTGGAAGAGTTGCACAGGGGATCTGCCTTCATGTTGTTGACAATCTGTAACCAGAAGAATTTAAAAAACATTATCTTAAAACCAGAGCGCTGGGAACTGAGTGGGACATGAGTTAATTACAAAATTTATTCAATTGCAGCCCATATTCCCAGTTCTGGAGAGGGGAAATACTTCCCCTATGAATACTCCCTAATATCCCAGAACAGTTTTTGGACTTTTAGGTATGTTGAGCATGTAGAAAAAGTACACTGCAAGAAGGAGTTGGACTTTTCCAGGAGGTATTTGCCCATCTACAGAACTGCACAGTGCTGGGACCCCAAATTGAAGAGGCTGGGTGGGCAGAGAGTAAAGACCTGACCTTTGCTTAGTGAAGACCAATCCTTTTTCTTAGTGCCTGGTTTGTATTGGAGGGACATGTCACTGAGGTGGGGTGCCCTGTTCCCTTTTTGATGTAGATGGCCATATGTTTAGGATCAGGAACAAGCAGAAAGTTTAATTTTAGGAGAAAATCTGGGGATCATGCCACAGTATATATGCCCAAGGACAACGAATCCAGCCCCTCTGCCAGTGTGGAGGAGAATTTCTGACAGGCTCTAAGGTTGTTATGTACGTCATCATCACTGGTTGTCTTCTGCCTAGTGCCCCTCCCTCTGTATATTCCTGTTGACTGTTCAGGGAAGCTAAAAGGGCACTGAGAATGTGATTTCATGGAGGCTGATTGCTTTTCCTTGTCTGCCCTTCTCCTTAATGCTGTGTTAAAGCAAATGGATGGGAAGTGCTCCTTTTTGTCTCCAGCATTTTGTGACATCATCGTGCTCTGTGCAGAAAGTTGATGGAGCCATCACTGCCCAGGCCTTACTGGAACTCAGGGAGCAGCCAGGAGTGGGGCTTGGACCAGTGGAGCCTGAGCACCAGCAAACCTTCTGCCTCAGGGTCTTGAGTAATGCAGATGCAGAAGAGGGCTTTGGTACATGAGTAGTGCCATGAAGCTAGCCTGGTCCTAAAAAAATAGCACAGAGATGCCCAAGGCTTATGCTTGAAAGTGTAGGAAGGTTTTCCACATGGTTGTCCCCTAAACGCAGAGACCATCTTAGAGGAGCAGGAGCTCTGAGTCCAGCTGCATGCCCTGAAGTGGAAGCAACTGTGTTACAGGCTGGCTTTCACAGCATCTAAAAATTTGGTCTTGGCTCTTGGTGGAGGTGGTGACACAGAGACAACCAAGCCAATGGCAGCCTACCCCATGGCACTCACAGGGCTGTGCAGGTATCAGCCTGGGCTGACTGACTGGAGAGAGCTGATTCACTGAGTGGGTTATGCTGCTTCCCACACTGGCCTTTGCTCAGATGCTGCTACTTCGCTGTGCAGTGTAGACCTGCCCGTGTCTTTATTTGTGCCTATTTAGCAGGGCTTGTAAATCCAGCAACACCAGGCTTAGAGGAAAAGGCCTGTGATAGATGGTTCTGGCAGATTTTGGTCCTTGTGACTTATTTAGCTGTTGAAAATGGTGGTGAGGCAGCAAAGAGGAAAGGTAAGTTTCCTTGTTTTGACTTCACACCCCAGGTGAGGAAGTTCTCTCTGGAAGGGGGAGAGATTATGCTCTCCTGGGACCAACAGAGTAGGAGAACGAGGCCCTGACCTTTAGGGAGGCGAAGGTGGAAGAAAGAAGGATGCTGCAGTCTGAGAGGATGGAGAAGTGGGGCTGAAAGAGGAGGGAACAGCCCCTTGGCCAGGCCCCAGAGTAATGTAAAGAGACATTTCCTGGAGATCCATAGCATTTCTGCTGAAATACAGAAACTTCTTGAAGCTCCTGGGTTGAAAAAAAAAAAAAAAGAGCTTGAAAAACAACCAGCCTTCTGTCTGAAAATGCAGTGAGTAGGGAGAACAAGTTCCCAACTGCTGCTTTTGTTTTCATTCCACTTTGTTTTGAGTTTTGCCTATCTTAAAGAAAAAGAGAAAAAAAAAGTAAATCTGCTGAAAGCAGACTTTGAGTTTGAGCCACATCAGCCCTTTTCAGAGCTGGCTTTGGGGGAAATGATCCAGGCAGGCCTGCCTCAAAACCATGGTCCTGCCAGGGGAATTCAGATCCATTCACTTCAGTTCCTTGAATCTGGATGCCTGTTTGGATCTGGATGCCTGTTTGGATCTGGATGCCTGTTCTCTGTCGGGCTTCATGTCACTGTGATGGCAGCAAACAGTGGTTATATTAAACTGGCTGTGGCTGTGACATTGTGCCAGGTTGCTGCCTTTGACCACAGCAATGCTTAATGCCACTGTTTGTGTTAATTGCAGAGTAGAAAACATGTTTACTGCCAGATTATGCCTTTTCTAGGCCAGGCTCATTGGCATAAAGTGCAAAAGCTCAGGGATTGAGGTTACTGAAACCTGAGGTGATGGCATGAGATTTGCCTTTGGGAACAAGTGGAGGAGCCCAGGTTGAGCTGCACGCCTGAGCCGGGCCTCAGCTCCTGGGTCCTTGGGGCTGAGCTGGGCCTCAGCTTGTGGCCCTGCCTCTCAACCTGTCTCTCCTTGGGGCCCCTCAG
Seq C2 exon
GTTGCGTTGTGTTTTTCGCCCGTTGGCAACAAGCTGCGGGTCCGCAGCAGGAGGTTCCCCGCCATCGTGAGCTGCACGGCGATCGATTGGTTCCAGGAGTGGCCACAGGAGGCCCTCGAGTCCGTCAGCCTCCGCTTCCTGCGAGACACGGACAGCGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111:ENSGALT00000001676:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(17.5=100)
A:
NA
C2:
PF127802=AAA_8=FE(19.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]