BtaINT0051304 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011307 | DNM1
Description
Bos taurus dynamin 1 (DNM1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076820]
Coordinates
chr11:98862434-98862737:+
Coord C1 exon
chr11:98862434-98862504
Coord A exon
chr11:98862505-98862685
Coord C2 exon
chr11:98862686-98862737
Length
181 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CTTCCTTCTCTCCTCATTAGTGC
3' ss Score
8.31
Exon sequences
Seq C1 exon
GTCATGCTCCTCATCGATATTGAGCTGGCTTACATGAATACCAACCATGAGGACTTCATAGGCTTTGCCAA
Seq A exon
GTGAGTGCTCCTTGGTCAGAGAAGGTGACAGTTTGTGTGACTATGTGTGTGTGTGTGTGTGTGTGTGTGTAGGGCCCAGGCCTGCTGGGGCAAGCCTCTGGGTCTGGTGCCCACTGAACAGTAGCAATGAAGCTGGACCTCTGGAGAGAGGTTCTGGGACTCTTCCTTCTCTCCTCATTAG
Seq C2 exon
TGCTCAGCAGAGAAGCAACCAGATGAACAAGAAGAAGGCTTCAGGGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011307:ENSBTAT00000032743:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.389
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(7.8=100)
A:
NA
C2:
PF0103115=Dynamin_M=PD(4.4=72.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGCTCCTCATCGATATTGAGC
R:
CTGGTTCCCTGAAGCCTTCTT
Band lengths:
122-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development