HsaINT0050629 @ hg38
Intron Retention
Gene
ENSG00000106976 | DNM1
Description
dynamin 1 [Source:HGNC Symbol;Acc:HGNC:2972]
Coordinates
chr9:128239445-128239779:+
Coord C1 exon
chr9:128239445-128239515
Coord A exon
chr9:128239516-128239727
Coord C2 exon
chr9:128239728-128239779
Length
212 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CCTCCCCTCCCTCCCATTAGTGC
3' ss Score
9.37
Exon sequences
Seq C1 exon
GTCATGCTTCTCATCGATATCGAGCTGGCTTACATGAACACCAACCATGAGGACTTCATAGGCTTTGCCAA
Seq A exon
GTGAGTGCTCCCCCAGGCAAAAAGTGAGTGCTCCCTGGGCAGAGAAGGTAACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGAGCCCAGGTCTGCTAGGTTAACCCTCTGGGTCCTGTGCCCACTAAGCAGTGGGCAGTAGAGCTGGGCCTCTTGAGAAGTTCTGAGACTCCTCCCCTCCCTCCCATTAG
Seq C2 exon
TGCTCAGCAGAGGAGCAACCAGATGAACAAGAAGAAGACTTCAGGGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106976:ENST00000372923:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.426
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(32.9=100)
A:
NA
C2:
PF0103115=Dynamin_M=PD(18.6=72.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development