RnoINT0049802 @ rn6
Intron Retention
Gene
ENSRNOG00000033835 | Dnm1
Description
dynamin 1 [Source:RGD Symbol;Acc:71096]
Coordinates
chr3:11352872-11353180:-
Coord C1 exon
chr3:11353110-11353180
Coord A exon
chr3:11352924-11353109
Coord C2 exon
chr3:11352872-11352923
Length
186 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CCTCCCCTCTCTCCCATTAGTGC
3' ss Score
10.5
Exon sequences
Seq C1 exon
GTCATGCTTCTCATCGACATTGAGTTGGCTTACATGAATACCAACCATGAAGACTTCATAGGCTTTGCCAA
Seq A exon
GTGAGTGCTCCCAGGAGTGACCCTTTGTGTGCGTGAGCGCACATATGCGTGTATATGTGCACATGTGTGTCGGTCCATTCCAGTTCTGCCAGCTTAACCCTCTAAGTCCCGTGCCCTGTGAGCAGTGAGCACTGGAGCCGAGCCTCTTGAGAGAAGTTTTGAGACTCCTCCCCTCTCTCCCATTAG
Seq C2 exon
TGCTCAGCAGAGAAGCAACCAGATGAACAAGAAGAAGACTTCAGGGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033835:ENSRNOT00000047921:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.389
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(7.8=100)
A:
NA
C2:
PF0103115=Dynamin_M=PD(4.4=72.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGCTTCTCATCGACATTGAGT
R:
CTGGTTCCCTGAAGTCTTCTT
Band lengths:
122-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]