DreINT0058786 @ danRer10
Intron Retention
Gene
ENSDARG00000009281 | dnm1b
Description
dynamin 1b [Source:ZFIN;Acc:ZDB-GENE-100920-3]
Coordinates
chr5:63018210-63020045:+
Coord C1 exon
chr5:63018210-63018280
Coord A exon
chr5:63018281-63019993
Coord C2 exon
chr5:63019994-63020045
Length
1713 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
3' ss Seq
GTGTCTTTTTCTCCCTTCAGCGC
3' ss Score
11.76
Exon sequences
Seq C1 exon
GTCATGCTGCTAATAGACATTGAGTTAGCCTACATGAACACCAATCATGAGGATTTCATTGGCTTTGCAAA
Seq A exon
GTAAGCACCATTACTGCAGGTATTATCCATTTATCAACATGATTATTATTCGCCACCAAAAAAACACAAACATCTAGATTAGAACGCTCTAGCTTAATCATCTGGTTTGTAGAATCAACCATTGAAATTTGATTGCCAGGCTCACTCATTTCCGCTATGGCACTACGCCACTGCCTGTATCGCCGCCCCTGCCTTTTTTTTTCAAACTTCAAACAAACGTTTCTACGCTGGTGCCGAAACCCAAAAAGAAGGGAAGACATTGCTGCCAGCATGACAACTCTTTCTCCTACGCCTTTTGCGGAAGTGATCCAGGTGCTCGAGGGCCTCCTCCAAGAACAACATCAGGCTCTTATGGACATGCGAGTGGAATAGGAACAACGGTTCCGGGTCCTGTTGAAGCCCAGCAGGATGACCAATGAATAAGAGTGGCCGATCCTTTGTGTACACTCAGCAGCTCTGTGATGCCTGCCGCAGATGGCTGATGCAGGGTGGCCGGACCGTCGACCACCATGGACCCTGTGGTTCTGGGTCAGTTCATCGCCCTCCTCCCTCCCCTGACATCGGAATGGGTCCAGTGCCACCAGCCTGAGAAGCTTGACATCGCCATCCAGCTGGTGGATGACCATTTGGTGGCGAAGTCCAGGGTTGGCGAATTAAGATCCCTGCTGTTCTTCCGTCTCTCTCTGCTCCACCCATTGTCTCACTTTTGAAGCAACTCTCTGGACCAATCACTGAGAGAATACAGGTGTTAATGCAACCCAGGCTCATTTTGAAAACGTAGTCCTGTGGACGTTTATGGAGACCGCCAAATACGTCCAACCAATTTTACTGATTGACCCGCCCTCCCACTTACTTCCCTAAACCCAATCAACAATTTACAAAAGCCGTCCTGATAAAAGAAAAGCCCCTGTCTGATTTTTACCACGTTTTTTGGATTTTACCACATTCTCACCCTGTTATTCACTCGTTCATTTTATTTTTTGGATTCTGTTTTTGTCTTACCTGATTTCTGGAAGCGCTCTTCCATAGACTCAAACCCAGTCGTTGTCGTCGTCAACTCCTCTCTGCGTCTCAAGTCTGCTGACGTACACGACTTGCTAACTGGACAAACTTGTTGTGGCGAGAAAAGCCTCTACACAGAGGTAAACGGTCAGCCGGTAAGTGCCAAAAGGAACGGCGTCATACCGACCCGCAGCGTTCGCTTAAAAAAAATGAAATGCAGCCATTTGTACATCCGGCTACATAATTTGCGGTCTCCAGAAATGTCAGAGGGACTACGTTTTCAGAATGAGCCTGGGTTGCATTAATCATGACACTAATTGACCTACTTTTTTTAGCCACCAGACTCCCAATCTGCTCTCCAATGTTGTGGGCAGTTTGTCCCCGTCCTCCCCGTCACACAGACTTTGTGTAATGGTACAAGACAGTGAAGTTTGAACACTTATTTTAGTGCGCTTTCTCAAACATGTCTCACAGTTATCACACGTTTGATCATTGACTGTAAGTTTTAGTTTCTTTTTTTTATCATTCAGAACATCACAGGAGATGAATTACAACAAAATTACATTGCATTGACAAATGTAGCACTCAGCAAGAGAAAAATCTATCTATTATTCATGAAAAAGACCTTAGCAGCAGAAAAACACTATAAAATTAATTAATTAATTTATACTATTTTGATTCATCTGGATTTGTGTCTTTTTCTCCCTTCAG
Seq C2 exon
CGCCCAACAGAGAAGCAGTCAGATGAATAAGAAGAAAGCTGCTGGCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009281:ENSDART00000134261:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(7.8=100)
A:
NA
C2:
PF0103115=Dynamin_M=PD(4.4=72.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]