HsaINT0050629 @ hg19
Intron Retention
Gene
ENSG00000106976 | DNM1
Description
dynamin 1 [Source:HGNC Symbol;Acc:2972]
Coordinates
chr9:131001724-131002062:+
Coord C1 exon
chr9:131001724-131001794
Coord A exon
chr9:131001795-131002006
Coord C2 exon
chr9:131002007-131002062
Length
212 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CCTCCCCTCCCTCCCATTAGTGC
3' ss Score
9.37
Exon sequences
Seq C1 exon
GTCATGCTTCTCATCGATATCGAGCTGGCTTACATGAACACCAACCATGAGGACTTCATAGGCTTTGCCAA
Seq A exon
GTGAGTGCTCCCCCAGGCAAAAAGTGAGTGCTCCCTGGGCAGAGAAGGTAACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGAGCCCAGGTCTGCTAGGTTAACCCTCTGGGTCCTGTGCCCACTAAGCAGTGGGCAGTAGAGCTGGGCCTCTTGAGAAGTTCTGAGACTCCTCCCCTCCCTCCCATTAG
Seq C2 exon
TGCTCAGCAGAGGAGCAACCAGATGAACAAGAAGAAGACTTCAGGGAACCAGGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106976-DNM1:NM_004408:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=NA C2=0.432
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(7.8=100)
A:
NA
C2:
PF0103115=Dynamin_M=PD(4.4=72.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)