DreINT0058765 @ danRer10
Intron Retention
Gene
ENSDARG00000010042 | dnm1a
Description
dynamin 1a [Source:ZFIN;Acc:ZDB-GENE-081104-27]
Coordinates
chr5:1290464-1292422:+
Coord C1 exon
chr5:1290464-1290534
Coord A exon
chr5:1290535-1292373
Coord C2 exon
chr5:1292374-1292422
Length
1839 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CTGATTTCTGTCGTCTTCAGTGC
3' ss Score
10
Exon sequences
Seq C1 exon
GTGCTGCTGTTGATTGATATCGAGCTGGCGTACATGAACACCAACCATGAGGACTTCATCGGATTTGCCAA
Seq A exon
GTGAGTTTCGTTTCCTCGACCGTAACGTGGCGAATTATTATTATTAAGCCTTATTAAACAAAACATCAAAACAGATTCAAATGAAGAATAATTATAATAGTAATCTACAAATTGTCTATTTATTTACTTAATGTTTATTTATATAATTACTTATTTATATAATTACATTGATAATATTTAATAAATAATAAGCACAAAATTATAACAATAGTTAATTGTACAAATATAAACGTAATATTAAAATCAAATAGCAGTAAACTATGGATTTTAATTATATGTATCATATTACTTTATCACAAGCATTCGCCTACATTAAGTAGAATAATAATACATATATAATGCTAATAACGTAATCTAATAGTTATTAATAAACTATTGTTCTTTTCTCAATATTAATGGTAATATATTATATCCATTTATATGGAGACACTATAATAAAATGGGAATGGTTGGTGATATTAACGTCCTGTTTGTGGCACATTAGTAAATGTGAGGGGGCAATCTTTTCAAGATGGGTGGTGACCATGGTGGCCATTTTAAAGTCGGCCATCTTGAATCCAACTTTTGTTTTTTTCAATAGGAAGAGGGTCATGTGACACGTCAAAATTATTGGGCATTTCACAAGAAAAACAATGGTGTGCTTGGTTTTAACGTAACTTTATTCTTTCATGAGTTATTTACAAGTTTCTGAGCACTTATAAAATGTGTTCAGTGTGCTGCCTATTGTGTTGGATTGTCAATGCAACCCTCTTCTCCGACTCTTCACACAGTGATAGCAACACAGCAGGAGAAACTCTAGCACAGGCTTCCAGTATCTGTAGTTTCAGGTGCTGCACATCTTGTATCTTCACACCATAGACAACAAAGATAGTGGAGCCATTCTTCATCAATGGAAACCTCAAGGCCACTGGATATTTGAAACTGCTCCATGATGATGTGTTTCCCTCTTTACGCACTGAAGCTGACCCGTTTTCTGAGTTTCTCCAGCAAGATGGTGCACCACCACATTATGGGTGTCAGGTCCAAGCATTCCTAGATGAACAGTTTCCTGAAAAGTGGATTGGTTGTCGTGGGCCAGTTGAATAGCCCCCAAGGTCTCCCGATCTGACCCCCTTAGACTTTTATATTTGGGGTCATCTGAAGGCAATTGTTTATGGTGTGAAGATACAAGATGTGCAGCACCTGAAACTACAGATACTGGAAGCCTGTGCTGGCATTTCTCCTGCGGTGTTGCTATCAGTGTGTGCATTGACAATCCAACACAATGGGACAGCACATTGAACGCATTTTATAAGTGGTCAGAAACTTGTAAATAACTCATGAAAGAATAAAGTTACGGTAAAACCAAGCACACCATTGCTTTTCTTGTGAAATTCCCAATAAGTTTGACGTGTCACATGACCCTCTTCCTATTGAAAAAAAACAAAAGTTGGATCCAAGATGGCCGACTTCAAAATGGCCACCATGGTCACTGCCCATCTTGAAAAGTTTGCCCCCTCACATATACTAATGTGCCACAAACAGGACGTTAATATCACCAACCATTCCCATTTTATTAAGGTGTCTCCATATAAATGGCCCACCCTGTATAATAAGCACAAATATATTATTATACTATATTAATAATAAACACCAATGTTAATCTACATAATAGCATAAAATATTATATGATAAATACTATTATGAATAAATGATTAATAATCTAACATACTAATTATTAATAATCTGATATTAATTCTCAATATGACCTAAACTAAATGGCATTTTACACATTTGAAGCTTTTATTCTGCCACTGTGTGTATTGTAAACATGTGTACTCTGATTTCTGTCGTCTTCAG
Seq C2 exon
TGCTCAACAGAGAAGCAGTCAGATTAAGAAGAAAGCAGCTGGGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010042:ENSDART00000147972:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.127
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(7.8=100)
A:
NA
C2:
PF0103115=Dynamin_M=PD(4.1=70.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]