BtaINT0052073 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018579 | DOK1
Description
Bos taurus docking protein 1, 62kDa (downstream of tyrosine kinase 1) (DOK1), mRNA. [Source:RefSeq mRNA;Acc:NM_001024543]
Coordinates
chr11:10069222-10069892:-
Coord C1 exon
chr11:10069708-10069892
Coord A exon
chr11:10069483-10069707
Coord C2 exon
chr11:10069222-10069482
Length
225 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
TCCCTCTACATCCTCTTCAGGTT
3' ss Score
9.59
Exon sequences
Seq C1 exon
GATCCCAGTTCTGGGTAACGGTGCAGAAGACTGAGGCCGCCGAGCGCTGTGGCCTGCATGGCTCCTATGTGCTGAGAGTGGAGGCAGAGAGGCTGACTCTTCTGGCCCCGGGGGCCCAGAGGCAGATATTGGAGCCACTTCTTTTCTGGCCCTACACTCTGTTGCGTCGCTATGGCCGTGACAAG
Seq A exon
GTAGGGTGCTGTCAAGACAGGACTGGCTGACTGGGTTGGGCACCTGTGGGAGGGGTGGACAGGAAGGTGGGAGACTGCACTCTAGATAACTCTTTCTTGCCTAGACCATGACCAACCTCCCTTTCCAGTGGTCTCTTTTTTGTAGGTCCCCTAACTAGTTCTAGCCCTGTGACTCACCTCCTCTGATGTCTCCTGGTAACGTGTTTCCCTCTACATCCTCTTCAG
Seq C2 exon
GTTATGTTCTCTTTTGAGGCTGGCCGCCGCTGTCCCTCCGGCCCTGGAACCTTCACCTTCCAGACGGCACAGGGAAATGACATCTTTCAGGCAGTCGAGACTGCTATCCACCGACAGAAGATTCAGGGAAAGGCTGGCCAGGGGCAGGATGTTCTCAGAGCTGATTCCCATGAAGGAGAAGTGGCAGACGGGAAGTTGGCTTCCCTCGCGGCCCCCCTGGAGCTCCCAGGAAGCCCTCCAGCCCTGTATTCTGAACCCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018579:ENSBTAT00000024728:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.375
Domain overlap (PFAM):
C1:
PF0217412=IRS=FE(58.7=100)
A:
NA
C2:
PF0217412=IRS=PD(38.5=46.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGTGCTGAGAGTGGAGGCA
R:
TGCCACTTCTCCTTCATGGGA
Band lengths:
306-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development