MmuINT0052584 @ mm9
Intron Retention
Gene
ENSMUSG00000068335 | Dok1
Description
docking protein 1 [Source:MGI Symbol;Acc:MGI:893587]
Coordinates
chr6:82980930-82982409:-
Coord C1 exon
chr6:82982225-82982409
Coord A exon
chr6:82982055-82982224
Coord C2 exon
chr6:82980930-82982054
Length
170 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCAT
5' ss Score
4.62
3' ss Seq
TGTTTCCCCCACCCCCTCAGGTA
3' ss Score
9.32
Exon sequences
Seq C1 exon
GATCCCAGTTCTGGGTAACCTCGCAGAAGACCGAGGCTTCTGAACGCTGCGGCTTGCAAGGCTCCTACATACTGAGGGTGGAAGCTGAGAAGCTGACTCTCCTGACTTTGGGTGCGCAGAGTCAAATCCTGGAGCCGCTCCTTTTCTGGCCCTACACTCTGTTGCGTCGCTATGGCCGGGACAAG
Seq A exon
GTGCATGGGGCTGTCTGGGAGGATGACCCGTCAGGGAGGGCTACCAGGTTGAGTAGCTGTAGGTGACAATTCCATTCTCAGGTGGTCTCTTCTGTGCAGATACAGTAACTTGGTCAGGCCTGTGACTCATTTTTTATGACACGCCTAACGTGTTTCCCCCACCCCCTCAG
Seq C2 exon
GTAATGTTCTCCTTTGAAGCTGGTCGCCGCTGCCCCTCAGGCCCTGGGACCTTCACCTTCCAGACTTCTCAGGGAAATGACATCTTTCAGGCAGTTGAGGCTGCCATCCAGCAGCAGAAAGCCCAAGGAAAGGTGGGCCAGGCACAGGATATCCTCAGAACTGACTCCCATGATGGGGAGACAGAGGGGAAGACAGTTCCCCCTCCTGTTCCCCAGGACCCCCTGGGCAGCCCTCCAGCCCTATATGCGGAGCCTTTAGACTCCTTGCGAATTCCTCCAGGCCCTTCTCAGGACTCTGTATATTCAGACCCCCTGGGCAGCACCCCTGCTGGGGCAGGGGAAGGGGTGCATTCCAAGAAACCTCTCTATTGGGATTTGTATGGGCATGTGCAGCAGCAGTTACTGAAAACCAAGCTGACAGACTCCAAAGAGGACCCCATCTATGATGAACCTGAAGGCCTGGCCCCCGCCCCTCCCCGGGGCCTTTATGATCTGCCTCAGGAGCCTCGGGATGCATGGTGGTGCCAGGCTCGGCTGAAGGAAGAGGGCTATGAGCTCCCTTACAACCCTGCCACCGATGACTATGCTGTGCCACCTCCCCGGAGCCCAAAGCCTGCTCCTGCCCCCAAGCCACAGGGCTTGATCCTTCCCGAATCGGGTACCACTCGTGGCAGTGGCAGCAAAGGCTTCAGCTCAGATACAGCTCTGTACAGCCAGGTCCAGAAAAGTGGGACCTCAGGGGCTTGGGACTGTGGACTCTCTAAAGTAGGGAATGACAGGGCGGGGGTCAAGTCTGAGGGTTCCACCTGAGACAGTTGCTGATAGGAGGTCCAATGGGGTGGTGGCACTGAAAAAGAAACCGTAGGGTGGGAGGGGCCAGGGACCAGAGGAGTCAAGGGATGACCAGTCCCAGGAGTAGAACAAACAGGGCTGAGGGATAGGCCCTGGGGAGCCCCAGCAGCGTTAAGGATGGCTAGCTGATGGACTAGGCCTATGGAAGCGGCCCACTGGTCTGAGTGGGTGCCCTTTGGGGAGACCAGTGTGGATCTTCATTCTTGTTTTGTTCTTTGCCAGATACATATTTAACTTATAAGACAAATCTCATTAAAGCCAGCTTGGGTTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068335-Dok1:NM_010070:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.758
Domain overlap (PFAM):
C1:
PF0217412=IRS=FE(58.7=100)
A:
NA
C2:
PF0217412=IRS=PD(38.5=14.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTCTGTTGCGTCGCTATG
R:
GAACAGGAGGGGGAACTGTCT
Band lengths:
243-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: