RnoINT0050508 @ rn6
Intron Retention
Gene
ENSRNOG00000007412 | Dok1
Description
docking protein 1 [Source:RGD Symbol;Acc:1309499]
Coordinates
chr4:113864215-113865650:-
Coord C1 exon
chr4:113865466-113865650
Coord A exon
chr4:113865296-113865465
Coord C2 exon
chr4:113864215-113865295
Length
170 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCAT
5' ss Score
4.62
3' ss Seq
GTTTCCCTCCACACCCTCAGGTA
3' ss Score
8.17
Exon sequences
Seq C1 exon
GATCCCAATTCTGGGTAACCTCGCAGAAGACCGAGGCTTCTGAACGCTGCGGCTTGCAAGGCTCCTACGTACTGAGGGTAGAAGCTGAGAAGCTGACCCTTCTGACTTTGGGTGCACAGAGTCAAATCCTGGAGCCGCTCCTTTTCTGGCCCTACACTCTGTTGCGACGCTATGGCCGAGACAAG
Seq A exon
GTGCATGGGGCTGTCTGGGAGGATGACCATCGGGGAGGGCTACTGGGTTGGGTAGCTGTAGGTGACAACTCCATTCCCAGGTAGTCTCTTCTGTGCAGATATACTAAATTGGTCAGACCTGTGACTCATTTCTTTAGACACTCCTAACCTGTTTCCCTCCACACCCTCAG
Seq C2 exon
GTAATGTTCTCCTTTGAAGCGGGTCGCCGCTGCCCCTCTGGCCCTGGGACCTTCACCTTCCAGACTGCCCAGGGAAATGACATCTTTCAGGCAGTTGAGGCTGCTATCCAGCAGCAGAAAGCCCAAGGAAAGGTGGGACAGGGACAAGATATCACCAGAACTGACTCCCATGATGGGGAGACAGAGGGGAAGATGGCTCCCACTCCTGTTCCCCAGGAACCCCTGGGCAGCCCTCCAGCCCTATATGCAGAGCCTTTAGACTCCCTGCGAATTCCTCCAGGCCCTTCTCAGGACTCTTTGTATTCAGACCCCCTGGGCAGCACCCCTGCTGGGGCAGGGGAAGGGGTGCAGCGGAAGAAACCTCTCTATTGGGATTTGTATGGGCACGTGCAGCAGCAGTTGCTGAAAACCAAGCTGATAGACTCCAAAGAGGACCCCATCTATGATGAGCCTGAGGGCCTGGCCCCTGCCCCTCTCCGGGGCCTTTATGATCTGCCTCAGGAGCCTAAGGATGCATGGTGGTGCCAGGCTCGGCTGAAGGAAGAGGGCTATGAGCTCCCTTACAACCCCGCCACCGACGACTACGCTGTGCCACCCCCTCGGAGCTCAAAGCCTACCCCTGCCCCCAAGCCACAGGGCTTGATCCTTCCTGAATCTGGTACCACAGCTGGCAGTGGCAGCAAAGGCTCAGATACAGCTCTGTACAGCCAGGTCCAGAAAAGTGGGACCCCAGGGAGATGGGACTGTGGACTCTCTAGAGTAGGGAATGACAGGGTGGGGGTCAAGTCAGAGGGTTCCACCTGAGACAGTTGCTGATAGGAGGTCCATGGGGTGGTGGCACTGAAGATCAGAGAAACCTGAGGGTGGGAGGGGCCGGGGGACCAGAGGAGTCAAGTGATGACCAGTCCCCGGAAGTTGTGGGAGTAGAAGAAACAAGGCTGCTGGACTGACTAGGCCTGTGGGAGAGGTCCACTGGTCAGAGTGAGGACACTTTGGGGAGGCCAGTATGGATCCTCACTCTTGTTCTTTGCCAGATACGTTTTAATTTATAAGGCAAATCTCATTAAAGGTGGCTTGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007412:ENSRNOT00000010020:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.734
Domain overlap (PFAM):
C1:
PF0217412=IRS=FE(58.7=100)
A:
NA
C2:
PF0217412=IRS=PD(38.5=14.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTTTTCTGGCCCTACAC
R:
AGCCATCTTCCCCTCTGTCTC
Band lengths:
247-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]