BtaINT0052076 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003341 | DOK2
Description
Bos taurus docking protein 2, 56kDa (DOK2), mRNA. [Source:RefSeq mRNA;Acc:NM_001102002]
Coordinates
chr8:69727564-69728171:-
Coord C1 exon
chr8:69727890-69728171
Coord A exon
chr8:69727652-69727889
Coord C2 exon
chr8:69727564-69727651
Length
238 bp
Sequences
Splice sites
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
3' ss Seq
ACGTTGGGCCTTCTCCCCAGGGT
3' ss Score
8.78
Exon sequences
Seq C1 exon
AAATGGCGCCGGTTCGGGGCTGCACTGTATGGAGGTTCAGGCTGTGCACTGGCCCGGTTGGAGCTCCAGGAGGGCTCCGAGAAGTCGCGCCGGGGAGAGGCCCCCCGGAGAGTGATCCGCCTCAATGACTGCCTGCGGGTGTCCGAAGCCAGCGGGGAGGCCAGCAGTCCCCGAGACACCAGCACCTTCTTCCTGGAGACCACGGAACGCCTGTACCTGCTGGCAGCCCCCACCGCTGAGCGTGGCGACTGGATACAGGCCATCTGCCTCCTGGCCTTCCCC
Seq A exon
GTGAGTCGTCCAGGGCTGTAGAGAGGATGTGGAGCACTGGGTCCCTGCCGAGGGCAGGTGTAGAGCGAGTCAAGGTCAGGATGCTGAGGGTGGTTCTTTGGTGGGGTGTGGATCCCAATTCAGAATAAAGATGGGGGGGTGGGGGTGGCAGACTGAGTGCATTTTGCAAGAAAGCTTAGGGTGGCCAGAGGTGGGGTTGAAGATGGCGATGGTGGTGAACGTTGGGCCTTCTCCCCAG
Seq C2 exon
GGTCGGCGGAAGGAGCTGTCAGGGCTGGAGGGGAAGGGTGGCCGGCCCCGCATGGAGGAAAATGAATTGTACAGCAGCACGACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003341:ENSBTAT00000004337:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=NA C2=0.733
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(83.5=96.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCACTGTATGGAGGTTC
R:
CAGCCCTGACAGCTCCTTCC
Band lengths:
292-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]