MmuINT0052586 @ mm9
Intron Retention
Gene
ENSMUSG00000022102 | Dok2
Description
docking protein 2 [Source:MGI Symbol;Acc:MGI:1332623]
Coordinates
chr14:71175273-71175878:+
Coord C1 exon
chr14:71175273-71175554
Coord A exon
chr14:71175555-71175790
Coord C2 exon
chr14:71175791-71175878
Length
236 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
3' ss Seq
CCCGGGACCTGCCTCCTCAGGGA
3' ss Score
7.13
Exon sequences
Seq C1 exon
AAGTGGCGCCGGTTCGCAGCCGTGTTATATGGAGAGTCTGGCTGTGCCCTAGCCAGACTAGAGCTCCAGGATGTCCCCGAGAAGACACGGCGAGGAGAGGCCACTCGGAAGGTTGTCCGCCTCAGTGACTGCTTACGGGTAGCAGAGGTAGGCAGTGAGGCCAGCAGCCCCCGGGACACCAGTGCCTTCATCCTGGAGACCAAGGAGCGCCTGTACCTACTGGCAGCCCCCTCGGCAGAGCGCAGTGACTGGATACAGGCCATCTGCCTGTTGGCTTTCCCG
Seq A exon
GTGAGGGGTACAAAGTGGCCCAGGGGAGGGCGGCCACCAGGGGAGGGCGATGTTACTTAGATACTTCCTGTGGACAGGTGGTAGAAGAACCAAAACTCTTTTTTAGGGGAGTTCTTCCTTAAGGGAGCCCAGTTTGAAGTGCACCCAGAACCAGCTGGCTGGGTGTGCACTGAAAGCGAATGTCAGAGAGCCTTGGGGTGGGTTCTGGTGCTAAGACCCGGGACCTGCCTCCTCAG
Seq C2 exon
GGACAGAGGAAAGGGTCACCAGGACTGGAGGAAAAGAGCGGCAGTCCCTGCATGGAGGAGAACGAGTTGTATAGCAGCTCCACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022102-Dok2:NM_010071:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.433
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(83.5=96.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTTCGCAGCCGTGTTATAT
R:
TCCTGGTGACCCTTTCCTCTG
Band lengths:
297-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: