Special

RnoINT0050510 @ rn6

Intron Retention

Gene
Description
docking protein 2 [Source:RGD Symbol;Acc:1310966]
Coordinates
chr15:52452354-52452955:+
Coord C1 exon
chr15:52452354-52452635
Coord A exon
chr15:52452636-52452867
Coord C2 exon
chr15:52452868-52452955
Length
232 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
3' ss Seq
GGGACCGTCTGCCTCCTCAGGGG
3' ss Score
6.54
Exon sequences
Seq C1 exon
AAGTGGCGCCGGTTCACAGCCGTGTTATATGGAGAGTCTGGCTGTGCCCTAGCCAGACTAGAGCTCCAGGATGGCCCGGAGAAGACACGTCGAGGAGAGGCCACTCGGAAGGTTGTTCGCCTCAGTGACTGCTTACGGGTAGCAGAGGTAGGCAGTGAGGCCAGCAGTCCCCGGGACACCAGTGCCTTCATCCTGGAGACCAAGGAGCGTCTGTACCTGCTGGCAGCCCCCTCAACAGAGCGCAGTGATTGGATACAGGCCATCTGCCTGTTGGCTTTCCCG
Seq A exon
GTGAGGTGTACAAAGTAGCACATAGGCACACAAGGGGAGGGCAATGTTAGATACTTCCTGTGGGCAGGTGGTGAAAGAAACAAAACTCTCTTTTAGAGGAGTTCTTCCTTAAGGGAACCCAGTTTGAAGTGCACTCACAACCAGAAGGCTGGGTGTGAGCTGAAAGTGTGGGTCAGAGGGAGGCTTTGGGGTGAGTTCTGGTGCTAAGACCTGGGACCGTCTGCCTCCTCAG
Seq C2 exon
GGGCAGAGGAAAGAGTCACCAGGTCTGGAGGAAAAGAATGGCAGTCCCTGCATGGAGGAGAATGAGTTGTATAGCAGCTCTACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013922:ENSRNOT00000018725:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.106 A=NA C2=0.533
Domain overlap (PFAM):

C1:
PF0016924=PH=PD(83.5=96.8)
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
ALTERNATIVE
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGACTAGAGCTCCAGGAT
R:
ATTCTCCTCCATGCAGGGACT
Band lengths:
294-526
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]