GgaINT1011783 @ galGal4
Intron Retention
Gene
ENSGALG00000026250 | DOK2
Description
docking protein 2, 56kDa [Source:HGNC Symbol;Acc:HGNC:2991]
Coordinates
chr22:1378151-1379556:+
Coord C1 exon
chr22:1378151-1378432
Coord A exon
chr22:1378433-1379456
Coord C2 exon
chr22:1379457-1379556
Length
1024 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
3' ss Seq
CCCTCACTCCTTCCTTGCAGAGG
3' ss Score
10.78
Exon sequences
Seq C1 exon
AAATGGAAGAAGTATTGGGGCGTTCTGTACCGGGAATCCTCCTGCTCCACCGCCCGCCTGGAGCTCTTCGAAAGCGCCGACAAACCGCGGAAGGGCGAGAGCAGCCGACGCCTGGTGAGGCTGAGCGACTGCGTGCACGTGGCCGAGGTGGGTGGGGAGGCGGGCTGCCCCCGCGCCACGGCCCCCTTCCTGCTGGAGACCACCGAGAAGCGGTACCTGCTGGCAGCAGAGGGCGGCGAGGTGGAGGAATGGGTGAGGAGGCTGTGCCAGCTGGCGTTCCCG
Seq A exon
GTGAGAGCCGAGGGGTGCACGGGTGGGATATGCGGGGGGTAGGGGGTGGTGGGTCCATTTGGGGCATGGGTGGATGGGTCCATCTGGGATATGGGTGGGTGGGATAAACACGGCATGGTGGATGGTGGGTCCATCTGGGGTATGGATGGGTGGTATAACCGGGGTATAGGGGATGGTGGGTCCATTTGGGGTATGGATGGGTGGTATAACCGGGGTATAGGGGATGGTGGGTTCATCTGGGGTATGGGTGGATGGGATAAAGGTGGTATGGGGGATGGTGGGTCCATTTGGGGTATGGATGGGTCCATTTGGAGAATGGATGGATGGGATAACCGTGGCATGGGGGATGCTGGGTCCATTTGGGGTATGAATGGATGGTATAACCAGTGTATAGGGGATGGTGGGTTCATTTAGGGCTACGGATGGGTCCATCTGGGGTACGGATGGGTCCATTTGGAGTATGGATGGATGGTATAACCAGGGTGTAGGGGATGGTGGGTCCATTTGGGTCATGGATGGATGGGATAGTGGTGGTATGGGGGATGCTCAATCCATTTGGGGTATGGGGGGGTCAATCTGGGGTATGGATGGGTGGGATAAGTAGTGTGTGTGGGATGCTAGGTCCATGTGGGGCATGGATGGATGGGGTAACCATGGCATGGGGGATGCTGGATCCATTTGGGGTATGGATGGATGGGGTAACCATGGCATGGGGAATGCTGGGTTCATTGGAGTATGAGATGTGGGAAGCGTCAGATCCATTTGGGATACAGATGGGATAAGTGTTGTGTGTGGGATGCTAAGTCCATTTGGATTATGGATGGCTGGGATAAGTAGGGTGTGGGAGATGGATCCATGCAGGGGATGGATGGGATAACTGGGCTGTGGGGTGGGCTGGATCAAATTGGGATATGGATGGATGGGCTAACCGGGTTGTGAGGTCTGCCGGGTCCCTTTGGGGTATAGACAGGTGGGACAACTGCACTGCGGGAGCCGTGGCTCAGCCCTCACTCCTTCCTTGCAG
Seq C2 exon
AGGAGCCAGGAGGAGCAGGCGGTGGGGAAGGACAGACAGCTGAGCTCCGACGGCGAGTTCTCCATGGCTGAAAACTCCCTGTACAGCTCCCGGGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026250:ENSGALT00000044208:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.176
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(79.3=97.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATTGGGGCGTTCTGTACCG
R:
TTTCAGCCATGGAGAACTCGC
Band lengths:
344-1368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]