BtaINT0052104 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017922 | DOLPP1
Description
Bos taurus dolichyl pyrophosphate phosphatase 1 (DOLPP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192041]
Coordinates
chr11:99568190-99568464:+
Coord C1 exon
chr11:99568190-99568274
Coord A exon
chr11:99568275-99568364
Coord C2 exon
chr11:99568365-99568464
Length
90 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
CTGTTCTCTCTCCTCCCCAGGTC
3' ss Score
13.35
Exon sequences
Seq C1 exon
ATCTCGTTCCTGGGGGGCCTGGCGCTCAACGAGGGGGTCAACTGGCTGATCAAACACGTCATCCAGGAGCCACGGCCCTGTGGAG
Seq A exon
GTAGGGCCCGGGCCTCGGGAGTCCCCCAGGTGAGCGTGTCCCGGGGAGGCCTGCGTCCCCTCACCACGCCCTGTTCTCTCTCCTCCCCAG
Seq C2 exon
GTCCCCACACGGCAGTGGGCACCAAGTACGGGATGCCCTCCAGTCACTCCCAGTTTATGTGGTTCTTCTCCATCTATTCCTTCCTTTTTCTGTATTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017922:ENSBTAT00000023834:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(21.5=100)
A:
NA
C2:
PF0156916=PAP2=FE(25.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAACGAGGGGGTCAACTGG
R:
ACAGAAAAAGGAAGGAATAGATGGA
Band lengths:
154-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development