MmuINT0052624 @ mm9
Intron Retention
Gene
ENSMUSG00000026856 | Dolpp1
Description
dolichyl pyrophosphate phosphatase 1 [Source:MGI Symbol;Acc:MGI:1914093]
Coordinates
chr2:30251497-30251772:+
Coord C1 exon
chr2:30251497-30251581
Coord A exon
chr2:30251582-30251672
Coord C2 exon
chr2:30251673-30251772
Length
91 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
CTGTTTGTTTTCTCCCCCAGGCC
3' ss Score
13.01
Exon sequences
Seq C1 exon
ATTTCATTCCTTGGGGGACTGGCACTGAATCAGGGCGTCAACTGGCTGATCAAACACGTCATCCAGGAGCCTCGGCCCTGTGGAG
Seq A exon
GTAGGGCTGGGACTTTGGGGATCCAGATCATCATGTTGGACACTGAGGAAGCCTGTATCTGCCATGATGCCCTGTTTGTTTTCTCCCCCAG
Seq C2 exon
GCCCACATACAGCAGTGGGCACTAAGTACGGGATGCCCTCCAGCCATTCCCAGTTCATGTGGTTCTTCTCCGTCTACTCCTTCCTCTTCCTGTATTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026856-Dolpp1:NM_020329:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.015
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(21.4=100)
A:
NA
C2:
PF0156916=PAP2=FE(25.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCATTCCTTGGGGGACTGG
R:
AGGAAGAGGAAGGAGTAGACGG
Band lengths:
175-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: