HsaINT0051498 @ hg38
Intron Retention
Gene
ENSG00000167130 | DOLPP1
Description
dolichyldiphosphatase 1 [Source:HGNC Symbol;Acc:HGNC:29565]
Coordinates
chr9:129085023-129085306:+
Coord C1 exon
chr9:129085023-129085107
Coord A exon
chr9:129085108-129085206
Coord C2 exon
chr9:129085207-129085306
Length
99 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
TGGTCTCCTCTCTCTCCCAGGCC
3' ss Score
10.66
Exon sequences
Seq C1 exon
ATCTCCTTCCTTGGGGGCCTGGCACTGAACGAGGGGGTCAACTGGCTGATCAAAAACGTCATCCAGGAGCCACGGCCCTGTGGAG
Seq A exon
GTAGGGCCTCAGCTGCGAGGGCCTGAGGTTCCCCCAGGTTGGGGCGTTACTGGGAGGTCTGCATCCCCCCGTGATGCCCTGGTCTCCTCTCTCTCCCAG
Seq C2 exon
GCCCCCACACAGCAGTGGGCACCAAGTACGGGATGCCCTCCAGCCATTCCCAGTTTATGTGGTTCTTCTCCGTCTATTCCTTCCTTTTCCTGTATTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167130:ENST00000372546:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.012
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(21.4=100)
A:
NA
C2:
PF0156916=PAP2=FE(25.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCCTTCCTTGGGGGCC
R:
GGAAGGAATAGACGGAGAAGAACC
Band lengths:
169-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development