RnoINT0050549 @ rn6
Intron Retention
Gene
ENSRNOG00000017663 | Dolpp1
Description
dolichyldiphosphatase 1 [Source:RGD Symbol;Acc:1307447]
Coordinates
chr3:8961768-8962046:+
Coord C1 exon
chr3:8961768-8961852
Coord A exon
chr3:8961853-8961946
Coord C2 exon
chr3:8961947-8962046
Length
94 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
CTGTTCTTTTTCTCCCCCAGGCC
3' ss Score
13.29
Exon sequences
Seq C1 exon
ATTTCATTCCTCGGGGGACTGGCACTGAATGAGGGTGTCAACTGGCTGATCAAACACGTCATCCAGGAGCCTCGGCCCTGTGGAG
Seq A exon
GTAGGGCTGAGACTTTGAGGACCCAGGGCTTCACGTTGGACATTGTGAGGAAGCCTGTATCTTCCCATGATGCCCTGTTCTTTTTCTCCCCCAG
Seq C2 exon
GCCCACACACAGCAGTGGGCACTAAATACGGGATGCCCTCCAGCCATTCCCAGTTCATGTGGTTCTTCTCTGTCTATTCCTTCCTTTTCTTGTATTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017663:ENSRNOT00000064557:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(25.9=100)
A:
NA
C2:
PF0156916=PAP2=FE(30.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCATTCCTCGGGGGACTGG
R:
AGGAAGGAATAGACAGAGAAGAACCA
Band lengths:
169-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]